KEGG   Dietzia sp. JS16-p6b: CT688_12145
Entry
CT688_12145       CDS       T05397                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
diz  Dietzia sp. JS16-p6b
Pathway
diz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:diz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CT688_12145
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:diz03021]
    CT688_12145
   03400 DNA repair and recombination proteins [BR:diz03400]
    CT688_12145
Enzymes [BR:diz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CT688_12145
Transcription machinery [BR:diz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CT688_12145
DNA repair and recombination proteins [BR:diz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CT688_12145
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AVZ40108
Position
complement(2647898..2651857)
AA seq 1319 aa
MQDVNYFDELVISLATAENIRNWSYGEVKKPETINYRTLKPEKEGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLDKIIYFAAYVITGVDSDLRHNELSTLEAQILEERKIIEDERDSDIEARAKKLEAD
LAELEAEGAKADQRRKVKDGGEKEMKKIRESAQRELDRLEEIWTTFTKLEVNQIIVDESI
YRELEDRFGEYFEGGMGAEAIQSLLENFDLESEAESLRDIIRNGKGQKKIRALKRLKVVS
AFLRSGNNPAAMVLGAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLQLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
DQVWDVLEEVIAEHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGRPLAMPRLDMVTGLYYLTRLDEGATGAYV
PATQDAPATGVYSTPAEAIMAVDLGVLDIHAPIRVRMTHQRPPAEIEAELFPEGWSQGQE
WMAETTLGRVMFNELLPADYPFVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDTGF
YWATRSGVTIAMSDVLVPPAKKEILASYDAKAARLESQFGLGKITDEERKSDLVKLWQEA
TDEIGQAMEANYPDSNPIPTIVKSGAAGNMTQIRSLAGMKGLVTRPNGEFIPQPIKSSFR
EGLTVLEYFMNTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSKGIETVI
ARREVDAHGVETGALSRDEHVETSTFARTLAEDAVDASGTVIVAAGTDLGDPTIEALIAA
GVEKVKVRSVLTCTTGTGVCATCYGRSMATGLLVDIGEAVGIVAAQSIGEPGTQLTMRTF
HQGGVGDDITGGLPRVQELFEARVPKGKAPIAEEAGRIRLEEEERFYTITIVPDNGADEI
VYEKLSKRQGLAHITLDDGSSRPIVDGDHLDRGQPLLEGPADPHEVLAILGPNGVQKFLV
DEVQKVYRAQGVSIHDKHLEVIVRQMMRRVAINESNSTEFLPGALVERAELTAENRRVLT
EGGSPASARPVLMGITKASLATDSWLSAASFQETTRVLTDAAINRRSDRLVGLKENVIIG
KLIPAGTGINRYRNSTVEPTEEARAAAYSIPDYGDGFYGPEDGFGDATGASVRLDDLGY
NT seq 3960 nt   +upstreamnt  +downstreamnt
gtgcaggacgtcaactacttcgacgagctggtcatcagcctggcgacggcggagaacatc
cgcaactggtcctacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
ccggagaaggagggcctgttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccc
gtcacccacatctggtacttcaagggcgtcccgtcgcggctgggctacctcctggacctc
gcgcccaaggacctcgacaagatcatctacttcgcggcctacgtcatcaccggcgtggac
tccgacctgcgccacaacgagctcagcaccctcgaggcgcagatcctcgaagagcgcaag
atcatcgaggacgagcgggactccgacatcgaggcacgcgccaagaagctcgaggccgac
ctggccgaactggaggccgagggtgccaaggccgaccagcgccgcaaggtcaaggacggc
ggcgagaaggagatgaagaagatccgcgagtcggcccagcgtgagctggaccgtctcgag
gagatctggaccaccttcaccaagctggaggtcaaccagatcatcgtggacgagagcatc
taccgcgagctcgaggaccgcttcggcgagtacttcgagggcgggatgggtgccgaggct
atccagtcgctgctggagaacttcgacctcgagagcgaggccgagagcctgcgcgacatc
atccgcaacggcaagggccagaagaagatccgcgccctcaagcgtctcaaggtcgtctcc
gcgttcctgcgctcgggcaacaacccggccgcgatggtgctcggggccgtcccggtgatc
ccgccggagctgcgtccgatggtccagctcgacggcggccggttcgccacctcggacctc
aacgacctctaccgccgcgtgatcaaccgcaacaaccgtctcaagcggctgatggatctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggacgcg
ctgttcgacaacggtcgtcgtgggcggcccgtcacggggccgggcaaccgaccgctcaag
tcgctctcggacctcctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggtcgttccgtcatcgtcgtgggtccgcagctccagttgcaccag
tgcggtctgcccaagctcatggctctcgagctgttcaagccgttcgtcatgaagcggctg
gtggacctcaaccacgcccagaacatcaagtccgccaagcggatggtcgagcgtcagcgc
gaccaggtgtgggatgtgctcgaagaggtcatcgccgagcacccggtgatgctcaaccgc
gcgcccacgctgcaccgcctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcggaggcgcaggccgaggcccgcatcctcatgctc
gcctcgaacaacatcctgtcgccggcgtcgggccgaccgctcgccatgccgcgtctggac
atggtgacgggtctgtactacctgacccggctcgacgagggagccacgggcgcctatgtc
ccggccacgcaggacgccccggcgaccggcgtgtactcgaccccggcggaggccatcatg
gccgtcgacctgggggtgctggacatccacgcgccgatccgggtgcggatgacgcaccag
cggccccccgccgagatcgaggccgagctgttccccgaggggtggagccagggccaggag
tggatggccgagaccacgctgggtcgcgtgatgttcaacgagctgctcccggcggactac
ccgttcgtcaacgagcagatgccgaagaagcgacaggccgtgatcatcaacgacctcgcc
gagcggtacccgatgatcgtcgtcgcgcagacggtggacaagctcaaggacaccggtttc
tactgggccacccgctcgggcgtcaccatcgcgatgtccgacgtcctggtcccgccggcc
aagaaggagatcctcgcctcgtacgacgccaaggcggcccgcctcgagtcgcagttcggc
ctgggcaagatcaccgacgaggagcgcaagagcgacctggtcaagctctggcaggaggcc
accgacgagatcggtcaggccatggaggccaactacccggactccaaccccatcccgacg
atcgtcaagtcgggcgcggcgggcaacatgacccagatccgctcgctcgcgggcatgaag
ggcctggtgacgcgtccgaacggcgagttcatcccgcagcccatcaagtcctcgttccgc
gagggtctgaccgtgctcgagtacttcatgaacacgcacggtgcgcgcaagggtctggcc
gacacggcgctccgtacggccgactcgggctacctcacgcggcgtctcgtcgatgtctcc
caggacgtcatcgtccgcgagacggactgtgggacgagcaagggcatcgagaccgtcatc
gcccgacgtgaggtggacgcgcacggggtcgagaccggtgctctctcgcgggacgagcac
gtcgagacctcgacgttcgcccgcaccctcgcggaggacgcggtcgacgcctccgggacg
gtcatcgtggccgccggcaccgacctcggcgacccgaccatcgaggcgctcatcgccgcc
ggagtggagaaggtcaaggtccgctcggtcctcacctgcaccacgggtacgggagtctgc
gccacctgctacggccggtccatggcgaccggtctgctggtcgacatcggcgaggccgtc
ggcatcgtcgccgcccagtccatcggtgagccgggcacccagctgaccatgcgcacgttc
caccagggtggcgtcggtgacgacatcaccggcggtctgccgcgtgtgcaggagctcttc
gaggcccgggtacccaagggcaaggccccgatcgccgaggaggcgggccgcatccgcctc
gaggaggaggagcgcttctacaccatcacgatcgtgccggacaacggcgcggacgagatc
gtgtacgagaagctgtccaagcgtcagggactcgcgcacatcaccctcgatgacgggtcc
tcccgcccgatcgtcgacggcgaccacctcgaccgcgggcagccgctgctcgaggggccg
gccgacccgcacgaggttctggccatcctgggcccgaacggtgtccagaagttcctcgtc
gacgaggtgcagaaggtctaccgcgcgcagggcgtgtcgatccacgacaagcacctcgag
gtgatcgtccgccagatgatgcgtcgcgtcgccatcaacgagtccaacagcaccgagttc
ctgcccggtgccctggtcgagcgcgccgagctcaccgcggagaaccgtcgcgtcctcacc
gagggcggctcgccggcctcggcgcgaccggtcctcatgggtatcaccaaggcctcgctc
gccacggactcgtggttgtcggcggcctccttccaggagaccacccgcgtgctcacggac
gccgccatcaaccggcgttcggacaggctcgtgggcctcaaggagaacgtcatcatcggt
aagctcatcccggcgggtaccggcatcaaccggtaccggaactcgacggtcgagcccacc
gaggaggcccgcgcggcggcctactccatcccggattacggggatgggttctacggtccc
gaggacggattcggcgacgccaccggcgcgtcggtccgcctggacgacctggggtactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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