KEGG   Dyella japonica: HY57_09260
Entry
HY57_09260        CDS       T03215                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
dja  Dyella japonica
Pathway
dja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HY57_09260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dja03019]
    HY57_09260
Messenger RNA biogenesis [BR:dja03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     HY57_09260
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_25 AAA_22 Flavi_DEAD DEDD_Tnp_IS110
Other DBs
NCBI-ProteinID: AIF47446
UniProt: A0A075JZC5
Position
complement(2215484..2216815)
AA seq 443 aa
MSFESLGLGPALLRALAEQGYAEPTPIQAAAIPVVMEGVDLLAAAQTGTGKTAAFSLPLL
HRLSQLPPAGTRRPRALVLTPTRELAAQVHDNLRDYGKHLRISATTIFGGVGMGPQMQAL
RRGVDIVIATPGRLIDHMQQRSIDLSGIDVLVLDEADRMLDMGFLPALKRILAALPKRRQ
TLLFSATFAPPIKALALQFMHEPREVSVTPPNTVANTVTHHVHPVDAAKKRDLLLHVLSQ
DSRRQTLVFSRTKHGADKLVRFLEAAGMRAAAIHGNKSQNARTRALGDFKSGRITVLVAT
DIAARGIDIDQLPIVINFDLPMVAEDYVHRIGRTGRAGADGMAVSLVSHDESGLLRDIRK
LLKQDIAISDVPGFEPSHPLRTDAAAPRPVQGQRQPRPARPQGSRPQGSHRPHGHANGHG
HGGERPAEGNRKRQRRRRPAAKA
NT seq 1332 nt   +upstreamnt  +downstreamnt
atgtcgttcgaatcgctgggcctcgggcctgcgttgttgcgtgcgctcgccgaacagggc
tacgccgaacccacccccatccaggccgccgccattccggtggtgatggaaggcgtcgac
ctgctcgccgccgcccagaccggcaccggcaagacggccgccttctcgctgccgctgctg
catcgcctgtcgcaactgccgcccgcgggcacgcgccgtccgcgcgccctcgtgctgacc
ccaacgcgcgagctggccgcccaggtgcatgacaacctgcgcgactacggcaagcatctt
cgcatcagcgccaccaccatcttcggtggcgtcggcatgggtccgcagatgcaggcactg
cgtcgcggcgtggacatcgtcatcgccacgccgggccgcctgatcgaccacatgcagcag
cgctccatcgatctttccggcatcgacgtgctggtgctggacgaagccgaccgcatgctc
gacatgggcttcctgccagcgctcaagcgcatcctggccgcgctgccgaagcgccgccag
acgctgctgttctccgccacgttcgcgccgccgatcaaggcgctggccctgcagttcatg
catgagccgcgcgaagtgtcggtgacgccgcccaacaccgtggccaacaccgtgacgcac
cacgtgcacccggtggacgcggcaaagaagcgcgacctgctgctacacgtgctttcgcag
gacagccgccgccagacgctggtgttcagccgcaccaagcacggcgccgacaagctggtg
cgcttcctggaagccgccggcatgcgcgccgccgccatccacggcaacaaaagccagaac
gcgcgcacgcgtgcgctgggcgatttcaagagcggccgcatcaccgtgctcgtcgccacc
gatatcgccgcgcgcggcatcgacatcgaccaactgcccatcgtcatcaacttcgacctg
ccgatggtcgcggaagactacgtgcaccgcatcggccgcacgggccgcgccggtgccgac
ggcatggccgtgtcgctggtgagccatgatgaatcgggcctgctgcgcgacatccgcaag
ctgctcaagcaggacatcgcgatcagcgacgtgccgggtttcgaaccctcgcacccgctg
cgcaccgacgccgccgcgccgcgccccgtgcagggccagcgccagccgcgcccggcgcgt
ccccagggttcacgcccgcagggttcgcatcgtccgcacggccacgccaacggccatggc
cacggcggtgagcgccccgccgagggcaaccgcaagcgccagcgccgccgccgtcccgcc
gccaaggcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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