KEGG   Dyella japonica: HY57_16460
Entry
HY57_16460        CDS       T03215                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
dja  Dyella japonica
Pathway
dja03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HY57_16460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dja03400]
    HY57_16460
Enzymes [BR:dja01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HY57_16460
DNA repair and recombination proteins [BR:dja03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      HY57_16460
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD Helicase_C MFD_D3 CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C AroM Glyco_tran_WecG AAA_30 AAA_22 RecG_dom3_C
Other DBs
NCBI-ProteinID: AIF48717
UniProt: A0A075K4T8
Position
3846044..3849499
AA seq 1151 aa
MTKSIPHPSLPTSPKQRRFWTSPRGSSRALLVAEAARSHSGLLVAVTRDTQRAHALEDEL
RVFAGNLPVLHFPDWETLPYDVFSPHPDIVSQRIATLYQLPNVQRGVLVVPIATLMQRIA
PRSHITGAGLVVRKKQKLDLAAEQRRLEAAGYRNVPQVGEPGDFAVRGALIDIFPMGAAE
PYRIELFDDEVESIRSFDPETQRSQQQVDHIELLPAREFPLTENAAKDFRTRLRERFPID
VRRCPLYQDMKEGVTPGGIEYYLPMFFEQTATLFDYLADNAVFLLGEGALESADQFWTQT
GERYDQRAHDIERPVLPPAELYLQPELLREQLNKRLRVELVESSHEHALPSGTQPAPELP
LNRKGEEPGTSLRHFLSSYPGRVLIAADSAGRREALIEQLASAGLKPDTVEGWPAFLAGA
DKLRLAITIAGLEQGFALNDPAVTVLTERELFGERVRTERKRRRGAARDPESIIRDLTEL
TIGAPIVHVDHGVGRYQGLVSMELGGMEGEFLTIEYAKGDKLYVPVAQLGLVSRYTGTAP
ELAPLHSLGGDAWERARRKAAEKVRDVAAELLAIYAQREARGGESMPIDRQMVEEFGASF
PFEETPDQEQAIDSVLKDLAAPRAMDRVICGDVGFGKTEVALRAAFAAATAGRQVAVLVP
TTLLAQQHYRNFADRFADWPVKVDVLSRFKSSKEVNEALKRLGDGQVDVIVGTHKLLAPD
IKFKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMSGLRDLSLIA
TPPAHRMAVRTFIAQWEPALIREAFQRELQRGGQVYFLHNEVDTIERAARELEELIPEAR
IGVAHGQMAERELERVMADFHRQRFNVLVCTTIIETGIDIPTANTIIINRADRFGLAQLH
QLRGRVGRSHHRAYAYLVVPDRKAMTADAEKRLEAIASLEELGAGFTLATHDLEIRGAGE
LLGDEQSGQIQEIGFGLYTELLERAVRALKSGKLPDFDLSSEHETEVELHLPALIPDDYL
PDVHTRLTLYKRIASARNEDHLRDLQVEMIDRFGLLPDPAKQLFAIAQLKLMATPLGIRK
LDFGANGGRITFRDKPEVDPMAIIRLIQGQPRVYKLDGQDKLKVNLELPGATERIRAAQE
VLVQLGARRPG
NT seq 3456 nt   +upstreamnt  +downstreamnt
atgaccaagtcgattccccacccctccctgcccaccagccccaagcagcgccgtttctgg
acgtcgccgcgcggttcctcgcgcgccctgctggtcgccgaggccgcgcgcagccattcc
ggcctgctggtggccgttacccgcgacacgcagcgtgcacacgcactggaagacgaactg
cgcgtcttcgcgggcaacctgccggtgctgcatttccccgattgggaaacgctgccctac
gacgtgttcagtccgcacccggacatcgtctcgcagcgcatcgccacgctgtaccagttg
cccaacgtgcaacgcggcgtgctggtcgtgcccatcgccacgctgatgcagcgcattgcc
ccacgcagccatatcaccggggcgggactggtggtgcggaagaagcagaagctcgacctt
gccgccgaacaacggcgactggaagcggccggctaccgcaacgtgccgcaggtgggcgag
ccgggcgatttcgccgtgcgcggcgcgctgatcgacatcttcccgatgggtgcggccgaa
ccgtaccgcatcgagctgttcgacgacgaagtggaatccatccgcagcttcgatccggag
acgcagcgctcacagcagcaggtggaccacatcgagctgttgcccgcgcgcgagttcccg
ctcaccgagaacgccgccaaggatttccgcacgcgcctgcgcgagcgcttccccatcgac
gtgcgccgctgcccgctttaccaagacatgaaggaaggcgtgacgccgggcggcatcgag
tattacctgccgatgttcttcgagcagaccgccacgctgttcgactacctggccgacaac
gccgtcttcctgttgggcgaaggcgccctggaatccgccgaccagttctggacgcagacc
ggcgagcgttatgaccagcgcgcgcatgacatcgaacgtccggtgttgccgcccgccgag
ctgtacctgcaacctgaactgttgcgcgagcagctcaacaaacgcctgcgcgtcgagctg
gtggaaagcagccacgagcacgcgctgcccagcggcacgcagccggcgccggagcttccg
ctcaaccgcaagggcgaagagccgggcacgtcgctgcgtcatttcctgtcgagttacccg
gggcgcgtactgatcgccgccgattcggccgggcgccgcgaggcattgatcgagcagctc
gccagtgctggcttgaagcccgacacggtggaaggctggccagccttcctcgcaggcgcg
gacaagctgcgccttgccatcaccatcgccgggctggaacagggttttgcactcaacgac
ccggcggtcacagtgcttaccgagcgcgaactgttcggcgagcgcgtgcggacggagcgc
aagcgccgccgcggcgcggcgcgtgatccggaaagcatcatccgcgatctcaccgaactg
accattggcgcgcccatcgtccacgtcgaccacggcgtgggtcgttaccagggcctggtg
tcgatggaactgggcggcatggagggtgagttcctcaccatcgagtacgccaagggcgac
aagctctacgtgccggtggcgcaactgggcctggtcagccgctacaccggcaccgcgccc
gaactggcgccgctgcattcactgggcggcgacgcctgggaacgcgcacgccgcaaggcc
gcggaaaaggtgcgcgacgtggccgccgaactgctcgccatctatgcgcagcgcgaagcg
cgcggcggcgagtcgatgccgatcgaccgccagatggtggaggaatttggtgccagcttc
ccgttcgaggaaacaccggaccaggaacaggctatcgattcggtgctgaaggaccttgcc
gcaccgcgcgcgatggaccgcgtgatctgcggcgacgtgggcttcggcaaaaccgaggtc
gcgctgcgcgctgcgttcgccgccgccaccgccggccgccaggtcgccgtgttggtgccc
accaccctgctcgcccaacagcactaccgcaacttcgccgaccgcttcgccgactggccg
gtgaaggtggacgtgctgtcgcgcttcaagtcgtccaaggaagtgaacgaggcgctgaaa
cgccttggcgacggccaggtcgacgtgatcgtgggcacgcacaagctgctcgcaccggat
atcaagttcaagaacctcggcctggtcatcgtcgacgaagaacagcgctttggcgtgcgc
cagaaagaacagctcaagaagctgcgtgcggaagtggacctgctcaccatgacggccacg
ccgattccgcgcacgctcaacatggcgatgagcggtttgcgcgacctgtcgctgatcgcc
accccgcccgcccatcgcatggccgtgcgcaccttcatcgcgcaatgggaaccggcgctg
atccgcgaggccttccagcgtgagctgcagcgtggcggccaggtgtacttcctgcacaac
gaagtggacaccatcgagcgcgcggcgcgggaactggaagagttgatcccggaagcgcgc
atcggcgtcgcccatggccagatggccgagcgcgaactggaacgcgtgatggcggatttc
caccgccagcgcttcaacgtgctggtgtgtaccaccatcatcgagaccggcatcgatatt
ccgacggccaataccatcatcatcaaccgcgctgaccgcttcggcctcgcgcaactgcat
cagttgcgcggccgcgtggggcgttcgcatcaccgcgcctatgcgtacctcgtcgtgccc
gaccgcaaggcgatgacggccgatgcggagaaacgcctcgaagccatcgcttcgctggaa
gagctcggcgcgggttttacgctggccacgcatgacctggaaatccgcggtgctggcgaa
ctgctgggcgacgagcagtccggccagatccaggaaatcggcttcggcctctacaccgaa
ctgctggagcgtgcggtacgcgcgctgaaatccggcaagctgcccgacttcgacctcagc
agcgagcacgagacggaagtcgaactgcacctgcccgcgctgatccccgacgattacctg
ccggatgtccatacccgcctgacgctgtacaagcgcatcgccagtgcacgcaacgaggac
catctgcgcgacctgcaggtggaaatgatcgaccgtttcggcctgctgcccgatcccgcc
aagcaattgttcgccattgcccagctcaagctcatggctacgccactgggcatccgcaag
ctggattttggcgccaacggtggacgcatcaccttccgcgacaagccggaggtggatccg
atggcgatcatccggctgatccaggggcagccgcgcgtgtacaagctggatgggcaggac
aagctcaaggtgaatctggagttgccgggggcgacggagcgcattcgggcggcgcaggaa
gtgttggtgcagttgggggcgcggcggccggggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (24)   

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