KEGG   Dehalococcoides mccartyi BTF08: btf_404
Entry
btf_404           CDS       T02475                                 
Name
(GenBank) beta-lactamase domain-containing protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
dmc  Dehalococcoides mccartyi BTF08
Pathway
dmc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dmc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    btf_404
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dmc03019]
    btf_404
Messenger RNA biogenesis [BR:dmc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     btf_404
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Lactamase_B_6
Other DBs
NCBI-ProteinID: AGG07510
Position
389561..391216
AA seq 551 aa
MAKPKLKIVPLGGLGEIGKNMMSVEYGEDIILIDCGLMFPEEEMLGIDLVIPDISYVLEN
REKVRGIVITHGHEDHIGALPYILPQINVPIYCTKLTQGLISVKLKEAKLLHQTKINVIL
SDGTFKLGKLKVDFYPVCHSLPDSVGLVIQTPIGAVVHSGDFKLDYTPVDGKPTNLSRLA
MLGARGVLLLMSDSTHVELPGYTPSETVVGENIDRIIGAATGRVLVTTFASLISRQQQVI
DAAAKYGRKLFFAGRSMTEIHKMATDLGYLKVPEGLVCNIEQLQRVPPEKVVLMTTGSQG
EPTSALVRIANRDFRHVHIMKGDTVIISASPIPGNESLVSRTIDSLFRQGAKVFYDRIAK
VHVHGHASQEELKLVLNLVKPKYFVPVHGEYRHLTMHAELARTMGVAPENAFVMEDGDIL
ELNTKSGRITGKVPSGNVYVDGLSVGDVGGVVLRNRRMLSQDGIVVAIVAINKQTGMLVG
RPDIVSRGFVDPDESKAMLDASRDLIIKLLDHDGKDIPEGAMYNDVKETLNKFYYEQTKR
RPMVIPVMVKV
NT seq 1656 nt   +upstreamnt  +downstreamnt
atggcaaaacctaaacttaagattgtacctctgggtggcctgggtgagataggcaagaat
atgatgtctgtagaatatggggaagacatcatcctgatagactgcgggcttatgttcccc
gaagaagaaatgctgggtatagatttggtaatacccgacatttcatatgtactggaaaac
cgtgaaaaagtacggggtattgtcattacccacgggcatgaagaccatataggggcgtta
ccctatatacttccccagataaatgtaccaatttattgtactaaacttacccaagggctt
atttcggtaaagctgaaggaagccaaactgctccaccagaccaagataaatgttatcctg
tctgatggcactttcaagctgggtaaacttaaagtggatttttatccggtctgccatagc
ctgccggattcggtgggactggttatccagacgcctatcggggcggtagtccacagcggt
gatttcaaactggactatacgccggtagacggcaaacctaccaatctatcacgtttggct
atgctgggtgcacggggagtgctgctccttatgtcagactccacccatgtagaactgccg
ggttataccccctcggaaactgtggtgggcgaaaatattgaccgtattatcggggcggct
acggggcgggtactggttaccacctttgcttcgcttatttcccgccagcagcaggttatt
gatgccgctgccaaatacgggcgcaagctcttttttgccggccgcagcatgactgaaatt
cacaaaatggctaccgatttgggctaccttaaagtgcctgaaggtctggtatgcaatata
gagcagcttcagcgtgtacccccggagaaagtggttttgatgactaccggttctcagggt
gaacctacctctgcccttgttcgtatagccaaccgtgatttccgccatgtccacataatg
aaaggggataccgtaattatttcggcgtcccccatacccggcaatgaatcactggtaagc
cgtactatagacagccttttccgccaaggggccaaagtgttttatgaccgaatagccaaa
gtacatgtgcacgggcatgccagtcaggaagaactgaagctggtactcaatctggtcaaa
cccaagtactttgtgcccgtgcatggcgaataccgccacctgaccatgcatgccgagctt
gcccggactatgggtgttgctccggaaaatgcctttgtcatggaagacggggatatactg
gagttaaataccaagtccggtcgtattacgggcaaagtcccgtccggcaatgtctacgta
gatggtttgagtgtgggtgatgtgggcggggtggtactccgcaaccgccgtatgctttca
caggacggtatcgtagtggcaattgtggctattaacaagcaaaccggtatgctggtgggc
aggccggatattgtttccaggggatttgttgaccctgatgaatctaaagctatgctggat
gccagtcgtgaccttataatcaagctgcttgaccatgatggtaaggacattcccgaaggg
gctatgtataatgatgttaaagaaacgctgaacaagttttattacgagcagactaaacgg
cgtcccatggttatcccggttatggtaaaagtgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (12)   

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