KEGG   Dehalococcoides mccartyi DCMB5: dcmb_1140
Entry
dcmb_1140         CDS       T02476                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
dmd  Dehalococcoides mccartyi DCMB5
Pathway
dmd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dmd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    dcmb_1140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dmd03400]
    dcmb_1140
Enzymes [BR:dmd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     dcmb_1140
DNA repair and recombination proteins [BR:dmd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      dcmb_1140
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII UB2H AroM AAA_16 AAA_22 RecG_dom3_C
Other DBs
NCBI-ProteinID: AGG06740
UniProt: A0AA85ZX65
Position
complement(1087831..1091277)
AA seq 1148 aa
MNLIGLLPLIDQSPSFNSLFESLDRGEADISVLDAGRGFSLAAVYRKLKCPMLVITAQPE
RARELLEQIAAYSGEEPGFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGFIRSGDARII
VTAVPALLQRYISPKVFEQSFVQVWTGLETEPQNLICRFQQLGYRQESIVEMPGTYSHRG
GILDIFPHTEDNPVRLEFFGNTLESLRNFDPQSQRSGKQVNELTISPASEIFHLGQLPRQ
ELKNKLDALLTDNLNPEFSRTLSADINHLQEGLKPEYPEFFAPLFNTSSILDYLPADALV
VLDEPASIEQAAFHLDNEAEELRSDRLSQGELPSVYPRPYFSWAEISEMLKTKKRLIMAS
FGRESESLKLEFASPDNYVGRLTSLYEKLPELKGHAGRVVIVSHQAARLTELLAEEGIST
NVQTDILKPPPSASLSLVQGILGAGWSLSGSLHVFTDAELFGFVKQRRLPSKRPVARKGV
VLDIKPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGDKLYVPTDQMDRVNRFI
GSGDEPPSLHRLGTQEWQRAKEKASESAEETARELLEIYAKRELASGYAFSADTVWQQEM
EASFSYVETPDQLKALYDVKEDMEKPRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVA
VLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENLEKGEVDICIGTHRL
LQADIKFKDLGLVVIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDM
SIIETPPGERLPIKTVVAAFDERLIREAILREMERNGQVFFVNNRVMGINLLAERIQQLV
PEARIGIGHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL
TQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELGAGYGIAMKDLEIR
GAGTLLGVKQSGYINSVGFNLYTQMLSEAVAGLKATGSGLSKEEIRLKNMPAPKLDLPLD
AFIPEYYIQDLDLRLSIYQQLSALTSLAGVQEKEKELADRFGAMPPELENLLYSIRLRLL
AKKAHVDTIVTEGSQIVVRMLGGLIINKSLLEPLRAGVIAGRNQVAIEFQKIGDKWKEVL
EEVIWRLG
NT seq 3447 nt   +upstreamnt  +downstreamnt
ttgaaccttatcggtttgttgcctctaatagaccaaagtccttcatttaacagtctgttt
gaatctttagacaggggtgaagctgatatttctgttttagatgcggggaggggtttcagt
ttggcggcggtataccgcaagcttaaatgccccatgctggttatcactgcacagccggag
cgggccagggaactactggaacagatagccgcttacagcggggaagagccggggtttttg
cctgaccccagcctgttgccttaccagagggctgtttcagaccgtaattcctcactggaa
aaaatgcgtctggcaggcattttgggcggttttatccggagtggagatgcccggataata
gttacagctgtgccggctctgcttcagcggtatatatcccccaaagtatttgagcagtct
tttgtgcaggtctggacgggattggaaacagaaccccagaatcttatttgtcgttttcag
caactgggataccgtcaggaaagcatagtagaaatgccgggaacatattcacatcggggc
gggatactggatatcttcccccataccgaagataacccggtaaggctggaatttttcggc
aatacgctggaaagtttgcgtaattttgaccctcaaagccagcgttcgggaaagcaagta
aacgagcttaccatcagccccgcaagtgaaatttttcatctggggcagttgccccgtcaa
gagcttaaaaacaagctggatgctttgctcactgataaccttaatcctgaattcagccgc
actctgtcggcagatataaaccacttgcaggagggtttaaaaccggaatacccggaattt
tttgcccctcttttcaatacctcaagcatacttgattatctgccggcggatgctctggta
gtgctggatgagcctgcctctatagagcaggcggcttttcatctggataacgaagccgaa
gaactgcgctcagatcgtctgtcacaaggtgagcttccttccgtttatccccgcccgtat
ttcagctgggcagagatatctgaaatgttgaaaaccaaaaagaggcttattatggcctct
ttcgggcgggagagtgagtctctgaagctggagtttgcttctccggataattatgtgggg
cgtttaaccagtttgtatgagaaactgccggaactgaaagggcacgcaggcagggtggtt
atagtcagccatcaggccgcccgtttgaccgagcttctggcggaagagggtatttccaca
aatgttcaaacagatattttgaaaccccctccgtctgccagtctaagccttgttcaaggg
atattgggtgcgggctggagtttaagcggtagcttgcacgtatttaccgatgccgaactt
tttggttttgtaaaacagcggcgtttgccctccaaacgtccggttgcccgcaagggagtg
gtgctggacataaagccgggtgaatttgtggtgcatatagaccacggggtagccctgttc
agcggggtcagccatatgaaccgtgacggcatggataaagaatacctgatactccagtat
gccggcggcgacaaactctatgtacccacagaccagatggacagggtaaaccgttttata
ggcagtggggatgaacccccgtctttgcaccggctgggtactcaggaatggcaaagggct
aaagaaaaggccagtgaatccgcggaagagactgcccgtgagctccttgagatttacgcc
aaacgtgaactggccagcggctatgctttttcggcagacaccgtctggcaacaggagatg
gaagcatcgttctcctatgtggaaacacctgaccagctgaaggccctgtacgatgtcaaa
gaagacatggaaaaaccccgccctatggacaggcttatactgggggatgtgggctacggt
aaaaccgaggtagctataagggcggctttcaaagcggttatggacggcaaacaggtagca
gttttagtgcctactactgtgcttgcccagcagcattacactacttttcgtgagcggctg
gccacttttccggtaaaagtagaggtgctaagccgattccgcagccagtccgaacagaaa
gaagtggttgaaaatctggaaaaaggcgaggtggatatctgcataggtactcaccgcctg
cttcaggcagatataaagtttaaagacttgggattagtagttatagatgaagagcaacgc
ttcggggtagcccacaaggaatttttcaagaaactgcgtgcccaggtagatgtgcttacc
cttagcgctacccccataccccgtactttgcacatgtctatggtgggagtgcgggatatg
agtattatcgaaactccgcccggtgaacgcctgcctataaagaccgtagtagccgctttt
gatgaacggctgatacgtgaagctatactgcgggaaatggaaagaaacgggcaggtattt
tttgtgaataaccgggtgatgggcataaatttgctggcagaacgtatccagcagcttgtt
cccgaagcccgcataggtatcgggcacgggcagatggctgaagaaaaactggcggccgta
atggctgattttgtgcggcatgaactggatgtgctggtatgtaccaccataatagaatcc
ggggtggatgtgccgaatgccaatacccttatcataaaccgggcagaccgcttcgggctt
acccagctttaccagttgcggggaagggtggggcggagttctcagctggcatatgcctat
ttcctgtatgaaaaagaaaaacgccttagcggcgatgctgagaaacgcctgaaaactatc
tatgaggcagctgaactgggggcaggctacggcattgctatgaaagacttggagatacgg
ggtgcgggaacactgcttggggtaaaacagtcagggtatataaattcagtcggtttcaat
ctgtatacccagatgctgtcagaggctgtggccgggctgaaagctacgggcagcgggctt
tcaaaagaggaaatacgcctcaagaacatgcctgcccccaagctggatttacctctggat
gcatttatacccgaatattatattcaggatctggatctcaggctttccatctaccagcag
ttatcggctttaaccagtctggcaggagttcaggaaaaagaaaaggaactggcagaccgg
ttcggggcaatgccgccggaacttgaaaacctgctttattcaatccgtctgcgtctgctg
gctaaaaaagcccacgtggatactatagtaaccgaaggcagccagatagtggtgcggatg
ctgggcgggctgataataaacaagtctttgcttgaaccgcttcgggcaggggttatcgca
gggcgtaatcaggtggctatagagtttcaaaaaattggtgataaatggaaagaggtactg
gaagaggtaatctggcgattggggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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