KEGG   Drosophila melanogaster (fruit fly): Dmel_CG3180
Entry
Dmel_CG3180       CDS       T00030                                 
Symbol
Polr2B
Name
(RefSeq) RNA polymerase II subunit B, isoform B
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
dme  Drosophila melanogaster (fruit fly)
Pathway
dme03020  RNA polymerase
dme03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Dmel_CG3180 (Polr2B)
  09124 Replication and repair
   03420 Nucleotide excision repair
    Dmel_CG3180 (Polr2B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dme03021]
    Dmel_CG3180 (Polr2B)
   03400 DNA repair and recombination proteins [BR:dme03400]
    Dmel_CG3180 (Polr2B)
Enzymes [BR:dme01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Dmel_CG3180 (Polr2B)
Transcription machinery [BR:dme03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     Dmel_CG3180 (Polr2B)
DNA repair and recombination proteins [BR:dme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Dmel_CG3180 (Polr2B)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 41721
NCBI-ProteinID: NP_001287323
FlyBase: FBgn0262955
UniProt: P08266 A0A0B4LI86
Position
3R
AA seq 1176 aa
MMYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIV
EDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLT
YSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPL
DPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNM
MARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMME
MVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCET
KKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYT
QKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTL
SHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPS
PILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVS
EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVAS
GVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINS
IVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQ
GMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRN
SETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTC
EGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEY
GYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGR
ARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECK
GCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVT
NT seq 3531 nt   +upstreamnt  +downstreamnt
atgatgtacgacaacgaggaagaactgtacgaggaggagaatgccgaggagatctctcac
gagctgtggcaggaagcctgctggatcgtgattaacgcgtacttcgacgagaagggcttg
gtgcggcagcagctggacagtttcgatgagttcattcagatgtcggtgcagcgcattgtg
gaggattcccccgccattgagttgcaggcggaagcgcagcacacatccggagaggtggaa
accccgcccagattctcgctgaaattcgagcaaatctatctttccaagccaacacattgg
gaaaaggatggttcgcccagtcctatgatgccgaacgaggcccgcctgcgaaatctaact
tactccgctcctctctacgtggacattacgaaaaccaagaatgtcgagggcctggatccc
gtggaaacgcagcatcaaaagactttcataggcaagattcccatcatgttgagatcaacg
tactgtttgctatcacagcttactgatcgtgatcttacggagctgaacgagtgcccgttg
gatcccggtggctacttcatcatcaacggctccgagaaggtgctaattgcccaagagaaa
atggccaccaacacagtgtacgtgttcagcatgaaagatggcaagtatgcctttaagact
gagattcggtcgtgtttggagcacagttccagacccacgtctacactgtgggtaaacatg
atggcaagaggatcgcaaaacataaaaaagtcagccattggtcagaggattattgccatc
ttaccgtacatcaaacaggagatacccattatgattgtgtttcgagcattgggcttcgtg
gccgatcgcgatattctggagcatatcatctatgacttcgacgatcccgagatgatggaa
atggtgaaaccttctctggacgaggcttttgtagtccaagagcagaatgttgccttgaat
ttcattggagctagaggagcacgtcccggagtcacaaaagacaagcgtataaagtacgct
aaggaaattttgcaaaaggaaatgctgccccacgttggagtatccgatttctgcgagacc
aagaaggcatactttttgggctacatggttcaccggctgctcttagcctctttgggcagg
agagaactcgatgatcgagatcactatggaaacaagcgacttgatctcgctggacccctc
ctggccttcctcttccgtggtctgttcaaaaacctgatgaaagaggtgcgcatgtacaca
cagaagttcatcgatcgcggaaaggacttcaaccttgaactggccatcaagactaatatt
attactgatggtttaaggtattccttggccactggcaattggggcgaccagaagaaggcg
catcaggcgagagccggtgtctcccaggtgttgaatcgcttgaccttcgcctctactctt
tcccatttgcggcgtgtgaattcgccaattggcagagacggtaaactggccaaacctcgt
cagttgcacaatactctttggggtatgttgtgtcccgctgaaactcctgagggagcagct
gttggtctggtgaagaacctggcgctcatggcttacatttctgtgggatcacaaccttct
cccattctggagttcttggaggagtggtctatggaaaacctggaggaaattgctccttct
gccatcgctgatgctacaaagatctttgtgaacggctgctgggtgggcatacatcgtgat
cctgagcagctcatggcaacgcttcgtaagttgcgtcgccagatggatatcatcgtgtca
gaggtgtctatgattcgagacattcgagatcgtgagatccgaatctatacagatgctggt
cgcatttgtcggccacttctcatcgtggaaaacggatcgctgctgcttaaaaagactcac
gtggagatgttaaaggagcgagactacaacaactacagttggcaggtccttgtagcctct
ggagtggtggagtacattgatacccttgaggaggaaacggtcatgatcgctatgtctccc
tacgatctgaagcaggacaaggattatgcttattgtaccacatacacacattgtgagatc
catccagccatgatcctgggcgtgtgcgcgtccattattcccttccccgatcacaatcag
agtccgcgtaacacctatcaaagcgctatgggtaagcaagctatgggcgtttatattacc
aacttccacgtgcgtatggacacactagcccacgtactttactatccgatgaagccactt
gtgaccacacgttccatggagtacctgcgtttccgagaactaccagctggcatcaattca
atcgtggctattctctgctacactggctacaaccaggaggattctgtcattctgaatgca
tccgctgtggagcgtggattcttccgctctgtgttctaccgatcatacaaggattcggag
aacaaacgtgtcggtgatcaggaagagaacttcgagaagcctcatcgcggcacctgccaa
ggaatgagaaatgctcactacgacaagttagacgatgatggaattattgccccaggaatt
cgtgtatctggcgacgatgtggttattggcaagaccattacccttcctgaaaacgacgac
gaactggacagcaacacgaagcgtttctccaaacgagatgcctccactttcctgcgaaac
tctgagacgggtattgtggaccaggtgatgcttacgctcaacagcgagggctacaagttc
tgcaagattcgagtgcgctcggtgcgtattccgcagatcggcgataagttcgcttctcgt
cacggacaaaagggaacgtgcggcatccagtaccgtcaggaggacatggccttcacatgc
gagggattggcacccgatatcattattaacccccacgctatcccatctcgtatgacaatt
ggtcacttgatcgagtgtctgcagggaaaactgggatccaacaagggagagatcggtgat
gctacacccttcaacgatgccgtcaacgtgcaaaagatctccaccttccttcaggagtac
ggctatcatcttcgaggcaatgaggtcatgtacaatggccacactggacgaaagattaat
gctcaggtcttcctggggcccacctactatcagcgtcttaagcacatggtggacgacaag
attcactctcgtgctcgaggccccgtccagatcctggtgcgtcagcctatggaaggtcgt
gctcgtgatggtggcttgcgtttcggtgagatggagcgtgattgccagatctcccacggc
gccgctcagttcctgcgagaacgtttattcgaggtctccgatccgtaccgcgtacacatc
tgcaacttctgtggcctgattgccatcgccaatctgcgcaacaatacgttcgagtgcaag
ggctgcaagaacaagacgcagatttcccaggtgcgactcccatatgcggccaagcttctc
ttccaggagctgatgtcaatgaacattgcgccgcgcctgatggtcacctaa

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