KEGG   Drosophila melanogaster (fruit fly): Dmel_CG4236
Entry
Dmel_CG4236       CDS       T00030                                 
Symbol
Caf1-55
Name
(RefSeq) chromatin assembly factor 1, p55 subunit, isoform A
  KO
K10752  histone-binding protein RBBP4
Organism
dme  Drosophila melanogaster (fruit fly)
Pathway
dme03082  ATP-dependent chromatin remodeling
dme03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:dme00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    Dmel_CG4236 (Caf1-55)
   03083 Polycomb repressive complex
    Dmel_CG4236 (Caf1-55)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dme03036]
    Dmel_CG4236 (Caf1-55)
Chromosome and associated proteins [BR:dme03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     Dmel_CG4236 (Caf1-55)
  Histone modification proteins
   HAT complexes
    HATB complex
     Dmel_CG4236 (Caf1-55)
   HDAC complexes
    Sin3A-HDAC complex
     Dmel_CG4236 (Caf1-55)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     Dmel_CG4236 (Caf1-55)
    PRC2.2
     Dmel_CG4236 (Caf1-55)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     Dmel_CG4236 (Caf1-55)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    Dmel_CG4236 (Caf1-55)
  Chromatin remodeling factors
   NuRD complex
    Dmel_CG4236 (Caf1-55)
   NuRF complex
    Dmel_CG4236 (Caf1-55)
   NuRF complex (fruit fly)
    Dmel_CG4236 (Caf1-55)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd ANAPC4_WD40 MIOS_WD40 NBCH_WD40
Other DBs
NCBI-GeneID: 41836
NCBI-ProteinID: NP_524354
FlyBase: FBgn0263979
UniProt: Q24572 C0MJE4
Structure
Position
3R
AA seq 430 aa
MVDRSDNAAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQ
DGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIE
IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH
QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH
LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK
TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST
EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEI
PASELETNTA
NT seq 1293 nt   +upstreamnt  +downstreamnt
atggtggatcgcagcgataatgcagcggaatccttcgacgacgccgtcgaggagcgcgtg
atcaatgaggagtataagatttggaaaaagaacacgccgttcctgtacgatctggtcatg
acgcatgccctggaatggccctcgttgactgcccagtggctgccggacgtgaccaagcag
gatggcaaggactactcggtacatcgtcttatactgggcacacacacatctgacgagcag
aaccatctactcatcgccagcgttcagttgcccagcgaggatgcccagttcgatggttcg
cactacgataacgagaagggcgagtttggaggctttggatcggtgtgcggcaaaatcgaa
atcgagattaagatcaaccacgagggcgaagtgaacagggcccgctacatgccccagaac
gcctgtgtaatcgccaccaagacgccgtcgagtgatgtcctggtcttcgactacacgaag
catcccagcaagccggaaccgtctggcgagtgccagcctgacctgcggctgcgcggtcat
caaaaggaaggctacggactctcttggaatcccaacctcaatggctatttgctgtcagcc
tctgatgatcacaccatctgcttgtgggacatcaatgccacacccaaggagcatagggtt
attgatgccaagaacatcttcaccggccacaccgccgttgttgaggacgtggcttggcat
ctgctacatgagtctctgttcggatcggtggctgacgaccagaagctgatgatctgggac
acgcgcaacaacaacacctcgaagccctcgcatacagtggacgctcacacagcggaagtc
aattgcttgagctttaatccctactcggagttcattctggccacgggctccgctgacaag
actgtagctctatgggatctgcgcaacctcaagctaaaactacattccttcgagtcgcac
aaggacgagatcttccaagtgcagtggtcgccgcataacgagactattctcgcctcctcc
ggcactgaccgccgcctacacgtctgggatttgtccaaaatcggcgaggagcagagtacg
gaggatgctgaggacggaccacccgagctgctcttcatccatggcggtcacactgccaag
attagcgatttctcgtggaaccccaatgagccatggatcatttgctccgtgtccgaggac
aatattatgcaggtctggcagatggccgagaatgtttacaacgacgaggagccagagatt
cccgcctccgagttagaaaccaataccgcttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   FLYBASE (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
3D Structure (5)   
   PDB (5)   
Protein domain (5)   
   Pfam (5)   
All databases (61)   

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