KEGG   Dehalococcoides mccartyi GY50: GY50_0366
Entry
GY50_0366         CDS       T02938                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
dmg  Dehalococcoides mccartyi GY50
Pathway
dmg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dmg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    GY50_0366 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dmg03400]
    GY50_0366 (uvrB)
DNA repair and recombination proteins [BR:dmg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     GY50_0366 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      GY50_0366 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD Kinesin Microtub_bd P-loop_SecA SPOUT_MTase_2 ATPase DUF87
Other DBs
NCBI-ProteinID: AHB13149
Position
complement(343891..345897)
AA seq 668 aa
MPDFKIVSDFALTGDQPQAVEKLSEGLVHELTDQTLLGVTGSGKTFTMANVIARVNRPTL
IISHNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDADINEEIDK
LRHAATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSLRRDLILRRLVDMQY
ERNDIDFSRGKFRLRGDTLEIQPAYEELALRVEFFGDEIERIVSLDPVSGELLADIDEIN
IYPAKHFVTSAEKMVEAIKGIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMQQAGY
CSGVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDAARKKTLV
DYGFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSQQVVEQLVRPTGLLEPVI
TVKPTGGQIDDLLEEVKKRVDKKERVLITTLTKKMSEKLADYLVEMGIKTHYLHSEVDTL
ERVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAA
RHVDGQVIMYADKITGSMQRAMDEISRRRKIQEDYNRLHNITPQGIRKAIKDINERIRSI
TAEVSGPEFRPAPTLREDIVRLIKELESQMKKAAKNLEFERAALIRDRVVELRTALETDP
VNKNERTK
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgcctgatttcaaaatagtctcggatttcgcgcttaccggtgaccagccccaagcggtg
gaaaaactctctgaggggctggtacacgagcttacagaccagaccctgctgggggttacc
ggctccggtaaaacttttaccatggcaaatgtaattgccagagtaaaccgtcccaccctg
ataatcagccacaataaaactctggctgcccagctttactccgaaatgaaagagttcctg
cccgaaaattcggttgaatactttgtaagttattatgattattaccagcccgaagcttat
gtcccccaaaaggacatgtatattgaaaaagacgctgacataaacgaggaaattgataaa
ctccgccatgcggccacccgcgccctgtttgaacggcgggatgtggttatagtagcctcg
gtttcctgcatttacggtttgggtgaacccgaagaataccgcagttttgtactccctttg
aaaaagggccagtccctgaggcgtgaccttatactgcggcggctggtggatatgcagtat
gagcggaatgacatagatttctcccgcggcaagttccgcctgcggggagatacccttgaa
atccagcctgcctacgaagaactggctctcagagtggagtttttcggtgacgagatagaa
cggatagtcagccttgacccggtaagcggcgaactactggctgacatagatgagataaat
atctaccccgccaagcactttgtaacctcagccgaaaaaatggtcgaagctataaagggc
attcaggccgagcttgaagaccgcctgaaggaactggaagccgagggcaaaatgctggaa
gccgcccgcctgaagcagcgcaccaattatgaccttgaaatgatgcaacaggcagggtat
tgctccggggtggaaaactattcccgccacctggcaggacggaaagcaggcagcgccccc
tggacactgctggattactttccggaagatttcctgctgatagtagatgaatcccatatg
agcctgccccagatacggggtatgtatgccggagatgccgcccgcaagaaaaccctggtg
gactacggcttccgcctgccctcagccatggataaccgccctttaagctttgatgaattt
aaagccagagtcaaacaggctatttacgtatcagccacacccggcccgtatgaaaaagaa
cactcccagcaggtagttgagcaactggtacgccccaccgggctgcttgaaccggttata
accgtaaaacccaccggcggccagatagatgacctgctggaagaagtaaaaaaacgggta
gataaaaaagaacgggtgcttatcactacccttaccaaaaaaatgtctgaaaaactggct
gattatctggtggaaatggggataaaaacccattatctgcattcggaagtagacacgctg
gaacgggtggaaatcctgcgtgatttgcggctgggggtttatgacgttatagtaggtata
aacctgctccgcgaagggcttgaccttccagaggtcagcctggtggccatactggatgcc
gacaaagagggttatctgcggagtgaacaggcccttatccagactatggggcgggccgcc
cgccatgtggacgggcaggttatcatgtatgcagataaaatcaccgggtctatgcagcgg
gctatggacgaaatcagccgccgccgcaaaatacaggaagactataaccgtctgcacaat
attaccccgcagggtatccgcaaggctatcaaggatataaatgaacgtatccgctcaatc
accgccgaagtcagcggccctgagttcaggcctgcccccactctcagggaagacattgtc
cgtttgataaaagaactggaaagccagatgaaaaaagcggccaaaaatctggaatttgaa
cgggcagcccttatccgtgaccgggtggtggaactgcggacggcacttgaaacagacccc
gtaaataaaaatgaaagaaccaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (19)   

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