KEGG   Desulfococcus multivorans: Dmul_23420
Entry
Dmul_23420        CDS       T04568                                 
Symbol
rne
Name
(GenBank) Rne: ribonulcease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
dml  Desulfococcus multivorans
Pathway
dml03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dml00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dmul_23420 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dml03019]
    Dmul_23420 (rne)
   03009 Ribosome biogenesis [BR:dml03009]
    Dmul_23420 (rne)
Enzymes [BR:dml01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Dmul_23420 (rne)
Messenger RNA biogenesis [BR:dml03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Dmul_23420 (rne)
Ribosome biogenesis [BR:dml03009]
 Prokaryotic type
  rRNA processing factors
   Dmul_23420 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AOY59114
Position
2618394..2619854
AA seq 486 aa
MSSKILINAVDHDECRIAKVTDSKLEEFNIENAAREITHGNIYKGIITRIEPGLQSVFVD
YGAERHGFLQKHEIHSDYFQDNRTGEDSISNLVRRGQELLVQVTKDPILNKGAMLTTFIS
LPGRYIVLMPGSKNKGISRKIEDEEERNRLKELLGMLKIPDGFGLIIRTAGASCTKTRLA
KDLRYLLTLWKNINKKGIGESAPALLYKERHLVLRSIRDSFTHDVKEILVDTESVYQEIK
DFIHIISPKHTRIVKLYKGDKPIFTKYELEDQIASIYENRVDLKSGGSIVIDPTEALVAI
DVNSGKSTQKRSIEQTAFSTNIEAAEEIARQLRLRDLGGLIVIDFIDMRESKHKLEVERN
LKSFIKLDKARIKVGRISRFGLLEMSRQRIRPSIEFGNFQPCKYCGGKGQLPSTEMLGLN
ILRRLQLETLKQGITRVKGVVPLDVADYLLNKKRREILDLEVRRDISILIEGDAAMLPKE
STITSE
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgagcagcaaaatccttatcaacgccgttgatcacgacgaatgccgcattgccaaggtt
acggacagcaaactggaagagttcaatatagaaaacgcggccagggagatcacccacggc
aatatctacaaaggcatcatcacccggatcgagcccgggcttcaatccgtatttgtagat
tacggcgccgaacggcacggctttcttcaaaagcatgaaattcacagtgactatttccag
gacaatcgtaccggagaggattccatcagcaatctcgttcggcggggacaggaactcctg
gttcaggtgaccaaggaccccatcctcaacaagggggccatgctgacaactttcatctcc
ctgccgggacgttacatcgtcctgatgcccggaagcaagaacaagggcatttcccggaag
atcgaggacgaagaggaacgcaatcgccttaaagaactcctcggcatgctcaaaatcccg
gacggtttcggtctcattattcgaacggccggggcaagctgcaccaaaacccgcctggcg
aaagacctcaggtatctcctcacgctctggaaaaacatcaacaagaaaggtatcggcgaa
agcgcgcctgccctgctttacaaggagcgtcatctcgtcctccgctccatccgggattcc
ttcacccacgatgtgaaggagatcctcgtcgacacggaatcggtctatcaggaaatcaaa
gatttcatccatatcatctcgcccaagcatacccgaatcgtaaagctctacaaaggggac
aaacccatctttaccaaatatgagctggaagaccagattgcgtccatttacgaaaaccgg
gtcgatctgaaatccggcggttccatcgtcatcgatcctaccgaagcgctggtcgccatt
gacgtcaactccgggaaaagcacccagaaacgctccatcgagcagacagcgttctccacc
aacatcgaggccgccgaggagatcgcgcgtcagttgagactcagggatctgggggggctg
atcgtcatcgatttcatcgacatgcgggagtccaagcacaaactggaggtagagcggaac
ctcaaatctttcatcaaactggacaaggcccgcatcaaggtcggacggatttcccgtttc
ggccttctcgagatgtcccggcagcggatccgcccctccatcgagttcggcaatttccaa
ccctgtaaatattgcggtggaaaggggcagttgccttcaacggaaatgctggggctcaac
attctgcgaagactgcaactggaaacattgaaacagggaatcacccgcgtcaagggcgtc
gtacctcttgacgtcgccgattatctgctgaataagaagagaagggagattctcgacctg
gaggttcgccgcgacatcagcattctcatagagggggatgcggccatgcttcccaaagag
agcacgattaccagcgagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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