KEGG   Desulfitobacterium metallireducens: DESME_00305
Entry
DESME_00305       CDS       T03599                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
dmt  Desulfitobacterium metallireducens
Pathway
dmt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dmt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    DESME_00305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dmt03400]
    DESME_00305
Enzymes [BR:dmt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DESME_00305
DNA repair and recombination proteins [BR:dmt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      DESME_00305
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter CarD_TRCF_RID Helicase_C ResIII AAA_22 RecG_dom3_C Flg_hook
Other DBs
NCBI-ProteinID: AHF05720
UniProt: W0E4G3
Position
61221..64751
AA seq 1176 aa
MSTIHHYLRQGLDIDQIQAAIVRKEWPQMVYNLSGSQKIALAAELLSGGKTGLILTYSEE
EAQKWVNDLKSWLPEKSVLYFPVTEWLPFEVLGRSRETTAERIKVLNQLAQNKQQIVVAP
ILALDRRMFSEERWKEYTQEFELGETYVLADVITKLVTAGYVRLDLVEGKGQFALRGGIL
DIYPLDGEPLRIEFFDDEVDSIRIFDLDTQKSTRSLETVLVPPVLEYVVRPEELEKLRWE
IKAQARKVSGRLNRSERTEAAERIQEKAQRLEERLSQGILDENSYPYLSLLENSLDSFFS
LLAPESYVILDDPLRLKEQLEFQLKERLEEYTQALEKGEEFISPEDQFINYPEILEYGTG
RPFVLLSTLPRQIPGVSPRQIYNLTARTLTGFMGKTGVLAEEIEHWQKMGYIVSLFAGDE
EHAERLIQGLRDRGAVAQRKKLEEPIQVGGVYVYAYSLDQGFELPLSKLVILSEAEIYKR
ERKTPAKRPVVKETKTTRLQFSDLKPGDYVVHVHHGVGRFLGIERLAVSGVEKDYFTVKY
AGEDRLYVPLDQLNLLQKYLGSDAEALPKLYKLGGNDWKKVKNKAKSSIKEMAIDLVKLY
AEREAVQGFAFSPDNVWQQEFEEKFPYEETPDQLKSIQEVKHDMMRLRPMDRLLCGDVGY
GKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHFNTFRERFTGYPVTIEMLSRFRTAKEQ
KVIIQGLKEGNIDIIVGTHRLISDAVKFKDLGLLVIDEEQRFGVTHKEKLKTLKANVDVL
TLSATPIPRTLHMSLVGVRDMSVIETPPEDRYPVQTYVAEFRPDLVRDAIRREIQRGGQV
FFVHNRVEDMEQVVHFLSQLVPEVRFGIAHGQMSETVLEKEMISFLEHENDVLVCTTIIE
TGLDMPNVNTLIIDESDRLGLGQLYQLRGRVGRSNRKAYAYFLYKPQKVLTEVAEKRLAA
IREFTEFGSGLRIAMRDLEIRGAGNLIGAQQHGQLAAVGFELYSQMLKEAVLEIKGEKVE
DKIEPSIEVQVDAFIPDEYIADRQVKASLYQRLVMISAEEELSDMVDELIDRFGNPPREV
ENLLKIIRIKWIAAGLKIQQIQQLKQQVLLKFASDPGLTGEKLMTVATGSPFPVSFGTTG
EGNLEIKVRLRSMGQEEILDAIQRVILVFNGIASEV
NT seq 3531 nt   +upstreamnt  +downstreamnt
ttgagtacaattcatcattatctccggcaaggattggatattgaccagattcaagcagca
attgtccggaaagaatggccacagatggtttacaatttatcgggaagccaaaagatcgca
cttgctgcagaactattaagtgggggtaagacagggttaattctcacctactcagaggaa
gaagctcaaaaatgggtcaatgatctaaagtcttggctacctgagaaatccgttctctac
tttccagtaacggaatggctaccctttgaggttttgggtcggagccgggaaacaactgcg
gagcggattaaggttttgaatcagcttgctcaaaataaacaacagattgtggtagcacct
attcttgccctcgatcgtcggatgttttcagaagagcgttggaaggaatatacgcaggaa
tttgaattgggagagacctatgttctggcggatgtgattacaaagctcgtgacagcaggc
tatgtgcggcttgaccttgttgaaggaaagggtcagtttgccctgcggggtggaattctc
gatatttatccactggacggagagccgcttcggattgagttttttgatgatgaagtggat
tcgattcgaatttttgatttagatacacagaaatcaactcggtctttagaaacggtttta
gttcctccggttctcgaatatgtcgttcgtcctgaggaattggaaaagttacgttgggag
atcaaagctcaggctcgtaaggtatcaggacgtttaaatcggagtgaacgaacggaagca
gcagagcgaattcaggagaaagctcaacgcttggaagaacggttaagtcaagggattttg
gatgaaaatagttatccttatctcagcttgctagagaattcgctagattcatttttctcg
ctactcgctccagaaagttatgtcattctggacgatcccttgcgtctgaaggaacaatta
gagtttcaacttaaggaacgcttagaagaatatactcaggccctggaaaaaggggaagaa
tttataagtccagaagatcaatttataaattatccggaaattcttgaatatggaacaggc
cgtccctttgttcttttgtccacacttcctcgtcaaattcccggagtctcgccacgtcag
atttataatcttacagcgcgcacattaacaggatttatgggtaagacgggtgttttagcg
gaggaaattgagcattggcagaagatgggatatattgtttctttatttgctggggatgag
gaacacgcggaacgactgattcaaggtttaagagaccgtggagcagtagctcagcgtaag
aaattagaggagcccattcaagtaggtggagtttatgtttatgcttattctttagatcaa
ggttttgaattgccactcagtaagcttgttatattgagcgaagcagagatttacaaaaga
gagaggaaaacgcctgccaagcggccagtggttaaagaaaccaagacaacaaggcttcag
ttctctgatctcaaaccgggtgattatgtggttcatgtccaccatggtgtcgggagattc
ttaggcattgaaagattggcagtgagtggggttgagaaagattattttacggttaaatat
gccggagaagatcgcttgtatgttccactggaccagttgaatttgcttcagaaatattta
ggtagcgatgctgaagcccttccaaagctctataaactgggcggaaatgattggaagaaa
gtaaagaataaggcgaagagctctattaaagagatggccattgatttagtgaagctttat
gctgaacgggaggctgttcagggatttgctttttccccagataatgtctggcaacaggaa
tttgaagaaaagtttccctatgaggagacgccggatcaactgaaaagtattcaagaagtc
aaacacgatatgatgcgtctaagacctatggatcgtctgctttgtggagatgtcggttat
gggaagacggaggtcgcattacgagcagcatttaaggcagtgatggacagcaaacaggtt
gccgtcttggttcctactacgattcttgctcagcagcatttcaatacatttagggagagg
tttacgggttatcctgtaacgatcgaaatgctcagtcgttttcgtacagcgaaggaacaa
aaagtgatcattcaaggtctcaaagagggaaatatcgatattattgtgggtacccatcgc
ctcatatcagatgccgttaaatttaaagatctaggacttttggttatcgacgaagaacaa
cgtttcggggtaacgcataaggaaaagctcaagacgttaaaggcgaatgtggatgttctt
accctttctgcaactcctattccgcggaccttgcatatgtcactcgtgggtgttcgggat
atgagtgtgattgagactccacctgaagaccgttatcctgttcaaacctatgttgcagaa
ttccggcctgatcttgttcgtgatgcgatacgtcgggagattcaacgaggcgggcaagta
tttttcgtgcataatcgagtggaagatatggaacaagttgtccattttttgagccaactc
gtacctgaagtgcgttttggaatagctcatggacagatgagcgagacggtgctggaaaag
gaaatgatctcctttcttgagcatgaaaatgatgttcttgtttgtacgacaattattgaa
acaggcttagatatgccgaatgtaaataccttaattattgatgagtcagaccgcttaggg
ttaggtcagctttaccagttacggggacgggttggacgttcgaatcgtaaagcctacgct
tatttcctctataagccgcagaaggttctgactgaagtggcagaaaaacgacttgcagca
atacgggaatttacagaattcggctcaggacttagaattgccatgcgagatttagaaatt
cgcggagcgggaaatttaattggagcccaacaacatggacagttagcagcggttgggttt
gaactttatagccaaatgcttaaagaagctgtcctagagatcaagggagaaaaggtcgag
gataaaattgagcctagtattgaggttcaagtggatgcgtttatacctgatgaatacatt
gctgatcgccaggtcaaagcctcactttatcagcgattggtgatgatctctgcagaagag
gaactcagtgacatggtggatgaattgattgatcgttttggtaatccgcctcgtgaagtg
gaaaacttattgaaaattatccgaattaagtggattgctgcaggattaaaaattcaacag
attcaacagctaaaacaacaagtactcctcaaatttgcttctgatcctggactaacggga
gagaaattgatgacggttgctacagggtctccgttcccagtctcctttgggacgacagga
gaaggtaatttggagattaaagtccggttacgttcaatgggacaagaggagattttagat
gcaatccaacgcgttatcttggtatttaatggtattgcttcagaggtatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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