KEGG   Dehalococcoides mccartyi CG4: X793_01885
Entry
X793_01885        CDS       T03648                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
dmy  Dehalococcoides mccartyi CG4
Pathway
dmy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dmy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    X793_01885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dmy03400]
    X793_01885
DNA repair and recombination proteins [BR:dmy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     X793_01885
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      X793_01885
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD Kinesin Microtub_bd ATPase P-loop_SecA AAA_30 SPOUT_MTase_2 DUF87
Other DBs
NCBI-ProteinID: AII59127
Position
complement(369045..371051)
AA seq 668 aa
MPDFKIVSDFALTGDQPQAVEKLSEGLAQGLTDQTLLGVTGSGKTFTMANVIARVNRPTL
IISHNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDADINEEIDK
LRHAATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSLRRDLILRRLVDMQY
ERNDIDFSRGKFRLRGDTLEIQPAYEELALRVEFFGDEIERIVSLDPVSGELLADIDEIN
IYPAKHFVTSAEKMVEAIKGIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMQQAGY
CSGVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDAARKKTLV
DYGFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSQQVVEQLVRPTGLLEPVI
TVKPTGGQIDDLLEEVKKRVDKKERVLITTLTKKMSEKLADYLVEMGIKTHYLHSEVDTL
ERVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAA
RHVDGQVIMYADKITGSMQRAMDEISRRRKIQEDYNRLHNITPQGIRKAIKDINERIRSV
TAEVSGPEFRPAPTLREDIVRLIKELESQMKKAAKNLEFERAALIRDRVVELRAALETDP
VNKNERTK
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgcctgatttcaaaatagtctcggattttgcacttaccggtgaccagccccaggcggtg
gaaaaactctctgaggggctggcacagggccttacagaccagaccctgctgggggttacc
ggctccggtaaaacttttaccatggcaaatgtaattgccagagtaaaccgtcccaccctg
ataatcagccacaataaaactctggctgcccagctttactccgaaatgaaagagttcctg
cccgaaaattcggtggaatactttgtaagttattatgattattaccagcccgaagcttat
gtcccccaaaaggacatgtatattgaaaaagacgctgacataaacgaggagattgataaa
ctccgccatgcggccacccgcgccctgtttgaacggcgggatgtggttatagtagcctcg
gtttcctgcatttacggtttgggtgaacccgaagaataccgcagttttgtactccctttg
aaaaagggacagtccctgaggcgtgaccttatactgcggcggctggtggatatgcagtat
gagcggaatgacatagatttctcccgcggcaagttccgcctgcggggagatacccttgaa
atccagcctgcctacgaagaactggctctcagagtggagtttttcggtgatgagatagaa
cggatagtcagccttgacccggtaagcggcgaactgctggctgacatagatgagataaat
atctaccccgccaagcactttgtaacctcagccgaaaaaatggtcgaagctataaagggc
attcaggccgagcttgaagaccgcctgaaggaactggaagccgagggcaaaatgctggaa
gccgcccgcctgaagcagcgcaccaattatgaccttgaaatgatgcagcaggcagggtat
tgctccggggtggaaaactattcccgccacctggcaggacggaaagcaggcagcgctccc
tggacactgctggattactttccggaagacttcctgctgatagtagatgaatcccatatg
agcctgccccagatacggggtatgtatgccggagatgccgcccgcaagaaaaccctggtg
gactacggcttccgcctgccctcagctatggataaccgccccttaagctttgatgaattt
aaagccagagtcaaacaggctatttacgtatcagccacacccggcccatatgaaaaagaa
cactcccagcaggtagttgagcaactggtacgccccaccgggctgcttgaaccggttata
accgtaaaacccaccggcggccagatagatgacctgctggaagaagtgaaaaaacgggta
gataaaaaagaacgggtgcttatcactacccttaccaaaaagatgtctgaaaaactggca
gattatctggtggaaatgggaataaaaacccattatctgcattcggaagtagacacgctg
gaacgggtggaaatcctgcgtgatttgcggctgggggtttatgacgttatagttggcata
aacctgctccgcgaagggcttgacctgccagaagtcagcctggtggccatactggatgcc
gacaaagagggttatctgcggagcgaacaggcccttatccaaactatggggcgggctgcc
cgccatgtggacgggcaggttatcatgtatgcagataaaatcaccgggtctatgcagcgg
gctatggacgaaatcagccgccgccgcaaaatacaggaagactataaccgcctgcacaat
attaccccgcagggtatccgcaaggctatcaaggatataaatgaacgtatccgctcagtc
accgccgaagtcagcggccctgaattcaggcctgcccccactctcagggaagacattgtc
cgtttgataaaagaactggaaagccagatgaaaaaagcggccaaaaatctggaatttgaa
cgggctgcccttatccgtgaccgggtggtagaactgcgggcggcacttgaaacagacccc
gtaaataaaaatgaaagaaccaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system