KEGG   Dermacoccus nishinomiyaensis: HX89_11205
Entry
HX89_11205        CDS       T03223                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
dni  Dermacoccus nishinomiyaensis
Pathway
dni03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dni00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HX89_11205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dni03400]
    HX89_11205
Enzymes [BR:dni01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HX89_11205
DNA repair and recombination proteins [BR:dni03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      HX89_11205
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter CarD_TRCF_RID Helicase_C ResIII RecG_dom3_C AAA_22 TFIID_30kDa
Other DBs
NCBI-ProteinID: AIF41414
UniProt: A0A075JHM9
Position
complement(2405222..2408851)
AA seq 1209 aa
MPEAAHLPLAPLLTRVCADESVKRLLALAADESLVDIAAAAGLRAPLVAALLQTGGDAAG
PMLVVTATGREADDMATALRNFVDYDDVAEFPSWETLPHERMSPRSDTVGRRLAVLRRLR
HPEAGGTYGPVRVVVASVRALMQPMAKGLGDLEPVSLAAGDERPLEDIVEALVAAAYTRV
DMVERRGEFAVRGGILDVFPPTEDHPVRLEFWGDTVEEIRWFKVADQRSLEVNPHGLWAP
PCRELLLTPEVRERAAELAPSLLGVADMLTKVSEGIAVEGMESLMPALLPAGMETLIDVL
PDAARVVLVDPERVRTRAHDLVSTSQEFLEASWTNAAAGNAVPVDLRGVLDGASYRSLLE
LREHALATAHPWWSFSSFAADDELHEFLEDDLPGTRVTIDSQDVPNYRGDTERASAEVAA
HVAAGRSVAVVTDGPGFAKRVTQVFAEHDLAARPMTQVAPGVEVATGSLGRGFEMPAAGL
VVLTEADLTGSAGTASTKDMRRMPSRRRNVVDPLQLKPGDHVVHEQHGVGRFVEMMQRTV
GGATREYLVLEYAASKRGQPGDRLFVPTDQLDQVTRYVGGEMPTLSKMGGSDWAATKSKA
RRHVKQIAGELIRLYSARQATPGHAFAPDTPWQRELEDAFAYVETPDQLSSIEEVKADME
KTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVKQHYQTFAERYAGFP
VKLASLSRFQSDKEAREVLAGLKDGSIDLVIGTHRLLSKEIEFKDLGLVIVDEEQRFGVE
HKEQLKQMRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGAYDEKQ
LTAAIRRELMREGQVFYVHNKVGSIEKQAARIRVLVPEARVATAHGKMEEARLEEVVVDF
WERKFDVLVSTTIVETGLDIANANSLIVERADQLGLSQLHQLRGRVGRGRERAYAYFMFP
AEKPLTETAHDRLQTIASNTDLGAGMQIAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVR
MVGEAVADYRGDDTSSMPVEIKIELPVDAHLPHEYVPGERLRLEAYKKLASVENEAALDE
IIAELKDRYGEPPAPVLNLFDVARLRTIARQAGISDIGVQGKYVRFGPVTELRESQQMRL
ERLFPGTLIKTNQERLLVPMPMTKPVAGKPLRDQAILQWAAQLVQAVLLDDIAAAAAAQE
MARAGGARR
NT seq 3630 nt   +upstreamnt  +downstreamnt
atgcccgaggccgcccacctgccgctcgcgcccctgctgacgcgcgtgtgcgccgacgag
tccgtcaagcggctgctcgcgctggccgcggacgagtcgctcgtcgacatcgcggccgcg
gccggtctgcgcgctcctctcgtggcggctctgctgcagactggcggcgacgcggcgggg
ccgatgctcgtcgtcaccgcgacggggcgcgaggccgacgacatggcgacggccctgcgc
aacttcgtcgactacgacgacgtcgccgagttcccgtcgtgggagacgctgccgcacgag
cgcatgtcgccgcgttccgacacggtcgggcggcgtctcgccgtgctgcgccgcctcagg
cacccggaagcgggcgggacgtacgggcccgtccgcgtcgtcgtcgcgtcggtgcgcgcc
ctcatgcagcccatggcgaagggcctcggcgacctcgaacccgtgagcctcgccgccggt
gacgagcgcccgctcgaggacatcgtggaagccctcgtggccgcggcctacacgcgcgtc
gacatggtcgagcgccgcggcgagttcgccgtgcgcggtggcatcctcgacgtgttcccg
cccaccgaggatcacccggtgcgcctggagttctggggcgacaccgtcgaggagatccgc
tggttcaaggtggccgaccagcgttcgctcgaggtcaacccgcacgggctgtgggccccg
ccgtgccgcgaactgctgctcacccccgaggtccgtgagcgcgcggctgagctcgcgccg
agcctgctgggcgtcgccgacatgttgacgaaggtcagcgagggcatcgccgtcgagggc
atggagtcgctcatgccggcgctgctgccggccggcatggagacgctcatcgacgtgctg
ccggatgctgcgcgcgtcgttctcgtcgaccccgagcgcgtccgcacccgcgcgcacgac
ctcgtctcgacgtcgcaggagttcctcgaggcgagctggaccaatgcggccgccggcaac
gccgtccccgtcgacctacgaggcgtgctcgacggcgcgtcgtaccgcagccttctcgaa
ctgcgtgagcatgcgctcgcgaccgctcacccctggtggtcgttcagctcgttcgcggcc
gacgacgagttgcacgagttcctcgaggacgacctgccgggtacccgcgtcacgatcgac
tcgcaggacgtgccgaactaccgcggcgacaccgagcgcgcgtccgccgaggtcgcggct
cacgtcgcggccgggcgcagcgtcgccgtcgtgacggacggcccgggcttcgccaagcgc
gtcacccaggtgttcgccgagcacgacctcgccgcacgcccgatgacgcaggtcgccccc
ggtgtcgaggtcgcgacgggttcgctcggccgcggcttcgagatgcccgctgcggggctc
gtcgtcctcaccgaggccgacctcaccggctcggcgggaacggcgagcacgaaggacatg
cgacgcatgccgtcgcgccgccgcaacgtcgtcgacccgctgcagctcaagccgggcgat
cacgtcgtccacgaacagcacggtgtcggccggttcgtcgagatgatgcagcgtaccgtc
ggcggcgcgacgcgcgaatatctcgtcctcgagtacgcggcgagcaagcgcggtcagccc
ggcgaccggctgttcgtgcccaccgaccagctcgaccaggtgacgcgctacgtcggcggc
gagatgccgacgctgtcgaagatgggcggctcggactgggcggcgaccaagtcgaaagcc
cgccgtcacgtcaagcagatcgccggcgagctcatccgcctgtactcggctcgacaggcg
acgccgggtcacgcgttcgcgcccgacacgccgtggcagcgcgagctggaggacgccttc
gcgtacgtcgagacgcccgatcagctctcgagcatcgaagaggtcaaggccgacatggag
aagacggtgcccatggaccgtctcgtctgtggtgacgtgggctacggcaagaccgagatc
gcggtgcgcgcggcgttcaaggcggtgcaggattccaagcaggtcgcggtcctcgtgccg
acgacgctgctcgtcaagcagcactatcagacgttcgccgagcgttacgcgggcttcccc
gtcaagctcgcgtcgctgtcgcgttttcagagcgacaaggaggcgcgcgaggtcctcgcg
gggctcaaggacggctcgatcgacctcgtcatcggaacgcaccggttgctgagcaaggag
atcgagttcaaggatctcgggctcgtcatcgtcgacgaggagcagcgcttcggcgtcgag
cacaaggagcagctcaagcagatgcgcacggccgtcgacgtgcttgcgatgtcggcgacg
ccgatcccgcgcacgctcgagatggctgtcaccggtatccgcgagatgtcgacgctcgcg
acgccgccggaggagcgtcaccccgtcctgacgttcgtcggggcgtacgacgagaagcag
ctgacggcggccatccgacgcgagctgatgcgtgaaggtcaggtgttctacgtccacaac
aaggtcggcagcatcgagaagcaggctgcgcgaatccgcgtactcgtgcccgaggcccgg
gtcgcgacggcgcacggcaagatggaggaggcgcgcctggaggaggtggtcgtcgacttc
tgggagcgcaagttcgacgtgctcgtctcgacgacgatcgtcgagacgggtctcgacatc
gcgaacgccaacagcctcatcgtcgagcgcgccgaccagctcggcctcagccagctgcac
cagctgcgcggacgcgtggggcgcggtcgcgagcgcgcgtacgcctacttcatgttcccg
gccgagaagccgctgaccgagacggcgcacgaccggttgcagacgatcgcgagcaacacc
gacctcggcgcgggcatgcagatcgcgatgaaggatctggagatccgcggcgccggcaac
ctgctcggcggcgagcagtccggccacatcgcgggggttggattcgacctgtacgtccgc
atggtcggtgaggccgtcgccgactaccgcggcgacgacacctcgtcgatgccggtcgag
atcaagatcgaactgcccgtcgacgcccacctgccgcacgagtacgtgccgggggagcgg
ctgcgcctcgaggcgtacaagaagctcgcgagcgtggagaacgaggcagccctcgacgag
atcatcgccgagctgaaggaccgctacggcgagccgcccgcacctgtgctcaacctgttc
gacgtggcccggctgcgcaccatcgcgcggcaagcgggcatcagcgacatcggggtgcag
ggcaagtacgtccgtttcggcccggtcaccgagctgcgcgagtcgcagcagatgcgcctc
gagcgcctcttcccgggcacgctcatcaagaccaaccaggagcggttgctcgtgcctatg
ccgatgacgaagcccgtcgccggcaagccgcttcgcgaccaggcgatcctgcagtgggcg
gcgcagctcgtccaggccgtgctgctcgacgacatcgccgccgccgcggcggcgcaggag
atggcgcgcgcgggcggagcgcgacgatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (32)   

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