KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os01t0200000-01
Entry
Os01t0200000-01   CDS       T02163                                 
Symbol
Os01g0200000, ATG3A, AUTOPHAGY_ASSOCIATED_GENE_3A
Name
(RAP-DB) Similar to autophagocytosis protein AUT1-like [Oryza sativa (japonica cultivar-group)].
  KO
K08343  ubiquitin-like-conjugating enzyme ATG3
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    Os01t0200000-01 (Os01g0200000)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:dosa04131]
    Os01t0200000-01 (Os01g0200000)
   04121 Ubiquitin system [BR:dosa04121]
    Os01t0200000-01 (Os01g0200000)
   03029 Mitochondrial biogenesis [BR:dosa03029]
    Os01t0200000-01 (Os01g0200000)
Membrane trafficking [BR:dosa04131]
 Autophagy
  Autophagosome formation proteins
   Atg8 conjugation proteins
    Os01t0200000-01 (Os01g0200000)
Ubiquitin system [BR:dosa04121]
 Ubiquitin-conjugating enzymes (E2)
  UBL-conjugating enzymes
   Os01t0200000-01 (Os01g0200000)
Mitochondrial biogenesis [BR:dosa03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    Os01t0200000-01 (Os01g0200000)
SSDB
Motif
Pfam: Autophagy_act_C
Other DBs
RAP-DB: Os01t0200000-01
Position
chr01:complement(join(5416461..5416621,5416302..5416372,5415941..5416057,5415682..5415851,5415496..5415581,5414986..5415037,5414840..5414905,5414226..5414356,5414026..5414122))
AA seq 316 aa
MQVKQKVYELYKGTVERVTGPRTVSAFLDKGVLSVPEFILAGDNLVSKCPTWSWEAGDPS
KRKPYLPPDKQFLVTRNVPCLRRAVSLEEEYDAAGAEVVLGDDEDGEGWLATHGVQASKQ
EEEEDIPSMDTLDIGKTEGIKSIPSYFSAGKKAEEEEDIPDMDTYEDSGNDSVATAQPSY
FVAEEPEDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMPLKPELVFEDISQDHARK
TVTIEDHPHLSAGKHASVHPCKHAAVMKKIIDVLMSQGVEPEVDKYLFIFLKFMASVIPT
IEYDYTMDFDLGSTSR
NT seq 951 nt   +upstreamnt  +downstreamnt
atgcaggtgaagcagaaggtgtacgagctctacaaggggacggtggagcgggtcacgggc
ccgcgcaccgtgtcggccttcctcgacaagggcgtcctctccgtccccgagttcatcctc
gccggcgacaacctcgtctccaagtgccccacctggtcctgggaggcgggcgatccgagc
aagaggaagccgtatctcccacctgacaagcaatttctcgtcaccaggaacgtgccttgc
ctaagacgtgctgtttcgcttgaagaagagtatgatgcagcaggagctgaggtagttctc
ggtgatgatgaggacggtgaaggctggcttgccacacatggagtgcaagcatcaaagcaa
gaagaggaggaagacataccatcgatggatacattggatatagggaaaactgaagggata
aagtctattccctcatatttcagtgctggtaagaaggctgaagaagaggaggatatacca
gacatggacacttatgaagactcagggaatgattcagtggctaccgctcaaccttcatat
tttgtcgcagaagagcctgaagatgacaacatccttcgtactaggacatatgacgttagc
atcacatatgacaaatattaccaaaccccacgtgtctggcttaccggatatgatgagtca
agaatgccactaaagcctgaacttgtgtttgaagatatcagccaagatcatgcacggaag
acggtgactattgaagaccatcctcacttgtcagcaggcaagcatgcttcagtgcatcca
tgcaaacatgctgctgtgatgaaaaagatcattgatgttctaatgtctcaaggagttgaa
ccagaagttgacaagtaccttttcatatttttgaagtttatggcctcagtcatacccact
attgaatatgactacactatggacttcgatctgggcagcacaagcagatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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