KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os01t0256900-01
Entry
Os01t0256900-01   CDS       T02163                                 
Symbol
Os01g0256900
Name
(RAP-DB) Similar to SmX6 protein.
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018  RNA degradation
dosa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Os01t0256900-01 (Os01g0256900)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Os01t0256900-01 (Os01g0256900)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os01t0256900-01 (Os01g0256900)
   03041 Spliceosome [BR:dosa03041]
    Os01t0256900-01 (Os01g0256900)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Os01t0256900-01 (Os01g0256900)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     Os01t0256900-01 (Os01g0256900)
Spliceosome [BR:dosa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    Os01t0256900-01 (Os01g0256900)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
RAP-DB: Os01t0256900-01
Position
chr01:complement(join(8574302..8574304,8574168..8574209,8573972..8574070,8573624..8573701,8572037..8572079,8571258..8571413,8571139..8571161))
AA seq 147 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGRGIGRGQDDG
GSKGGGGRGRGGIGGKGGIKGGGRGRG
NT seq 444 nt   +upstreamnt  +downstreamnt
atgcttccgctctcgctcctcaagaccgcccaggggcatcccatgctcgtggagcttaag
aacggcgagacgtacaacgggcacttggtgaactgcgacacgtggatgaacatccacctc
cgggaggttatttgcacctcaaaggatggtgataagttttggaggatgccagaatgttac
atccgtgggaacaccatcaagtatcttcgggttcctgatgaggtgattgacaaggtccag
gaagagacttcaaagagcagatcagataggaggccaccaggtgtaggccgcggaagagga
agaggtgatataggtactaagcctggaggcagaggcattgggcgtggccaggatgatggt
ggcagcaaaggcggtggtggccgtggaaggggaggaattggaggtaaaggtggcatcaaa
ggtgggggccgcggacgtgggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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