KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os01t0891400-01
Entry
Os01t0891400-01   CDS       T02163                                 
Symbol
Os01g0891400
Name
(RAP-DB) S1, RNA binding domain containing protein.
  KO
K03681  exosome complex component RRP40
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Os01t0891400-01 (Os01g0891400)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os01t0891400-01 (Os01g0891400)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Os01t0891400-01 (Os01g0891400)
SSDB
Motif
Pfam: RRP40_S1 KH_6 Rrp40_N RRP4_S1
Other DBs
RAP-DB: Os01t0891400-01
Position
chr01:complement(join(38758520..38758567,38758341..38758415,38758147..38758233,38757568..38757624,38757229..38757321,38756601..38756673,38756296..38756371,38756130..38756220,38755925..38756044))
AA seq 239 aa
MESRKPPPSALVDNHVVPGDVVLDLTEMTNQTIKLGAGLRQDCDTIQATSAGRLRLSKPN
KYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFE
IGTLIYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGLSRMLLSSPTCPVL
EALGKKLSFEIAVGLNGRVWVNAPSPSNVIVVSNAIIKSESLSGIGQRSMVESLLERLS
NT seq 720 nt   +upstreamnt  +downstreamnt
atggaatcgaggaagccgccaccctctgccctcgttgacaaccacgtggtccccggagac
gtcgtcctcgacctcaccgagatgaccaaccagaccatcaagctcggcgctggcctgcga
caggattgcgacaccatacaggctaccagtgctgggaggctacggctttcgaagcccaac
aaatattgggtcgagagctcgcagaagaggtatataccttctgtagaagatacagttctt
ggtgttgtggttgacaccaaaccagataacttcttggtggatataaaaggtcctaatttg
gcctttttaccagttcttgcatttgaaggtggtaccaggagaaatattccaaagttcgag
attggtacattaatatatgcacgagtggtgaaagcaaatagcatcatgaacccagagctc
tcgtgcatggatgctactgggaaagcagccgaatttggtcaactaaaagatggctatatg
tttgacacgtctactggcttgtcgcggatgttgttaagttctccaacatgtccagttcta
gaggcccttggaaaaaaactttcatttgagattgctgttggcctgaatggccgagtctgg
gttaatgcaccttctccaagtaatgtcattgttgtatcaaatgcgattataaaatcagaa
tctttgagtggcatagggcaacgaagtatggtggaaagtctcttggagagactatcttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (4)   
   Pfam (4)   
All databases (11)   

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