KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os05t0392300-01
Entry
Os05t0392300-01   CDS       T02163                                 
Symbol
Os05g0392300
Name
(RAP-DB) Similar to Cyclin-dependent kinase D-1.
  KO
K02202  cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03022  Basal transcription factors
dosa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Os05t0392300-01 (Os05g0392300)
  09124 Replication and repair
   03420 Nucleotide excision repair
    Os05t0392300-01 (Os05g0392300)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:dosa01001]
    Os05t0392300-01 (Os05g0392300)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dosa03021]
    Os05t0392300-01 (Os05g0392300)
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os05t0392300-01 (Os05g0392300)
   03400 DNA repair and recombination proteins [BR:dosa03400]
    Os05t0392300-01 (Os05g0392300)
Enzymes [BR:dosa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.22  cyclin-dependent kinase
     Os05t0392300-01 (Os05g0392300)
    2.7.11.23  [RNA-polymerase]-subunit kinase
     Os05t0392300-01 (Os05g0392300)
Protein kinases [BR:dosa01001]
 Serine/threonine kinases: CMGC group
  CDK family
   Os05t0392300-01 (Os05g0392300)
Transcription machinery [BR:dosa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     Os05t0392300-01 (Os05g0392300)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Capping factors
     Os05t0392300-01 (Os05g0392300)
DNA repair and recombination proteins [BR:dosa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     Os05t0392300-01 (Os05g0392300)
SSDB
Motif
Pfam: Pkinase PK_Tyr_Ser-Thr DUF6853
Other DBs
RAP-DB: Os05t0392300-01
Position
chr05:join(19084114..19084233,19084959..19085257,19085366..19085431,19086119..19086244,19088460..19088688)
AA seq 279 aa
MASGDGGDDAGVKRVADRYLKREVLGEGTYGVVFKAVDTKTGNTVAIKKIRLGKYKEGVN
FTALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETDLEAVIRDRNIVLSPADTKS
YIQMMLKGLAFCHKKWVLHSLSLLTLVWRAYLGVQSGTSLIRSLHDGTEHQNYYLAPSSM
DLQLIFGLLVVFLLNCCLGDRFSRVLVTLINLGRSLLHLELQSLLNGRTWFIFQIMLNTN
LSLHLHFAHCFQWPVMMHWIFYQECLHMIQKQELQLSRL
NT seq 840 nt   +upstreamnt  +downstreamnt
atggcgagcggcgacggcggcgacgacgcgggcgtgaagcgcgtggcggaccgctacctg
aagcgcgaggtcctgggagagggaacctacggcgtcgtcttcaaggccgtcgacaccaag
actgggaatacagtcgcaataaagaaaatccggctagggaagtacaaggaaggtgtcaat
ttcactgcattgagggaaattaaacttcttaaggagctgaaagattctaatattatagag
ctgattgatgctttcccttacaagggaaacttacatcttgtatttgagttcatggagact
gatttggaagctgtcatacgagataggaacattgtattatctccagctgatacaaaatct
tatattcagatgatgttaaaaggtttagccttctgccataagaaatgggtgctacacagc
ttaagcttgctgactttggtctggcgcgcatatttgggagtccagagcggaacttcactc
atcaggtctttgcacgatggtaccgagcaccagaattattatttggcaccaagcagtatg
gatctgcagttgatatttgggctgctggttgtatttttgctgaactgctgcttaggcgac
cgtttctccagggttctagtgacattgatcaacttgggaagatctttgctgcatttggaa
ctccaaagtcttctcaatggccggacatggtttatcttccagattatgttgaataccaat
ttgtctctgcacctccacttcgctcattgtttccaatggccagtgatgatgcattggatc
ttctatcaagaatgtttacatatgatccaaaagcaagaattacagctcagcaggctctag

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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