KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os06t0643600-01
Entry
Os06t0643600-01   CDS       T02163                                 
Symbol
Os06g0643600
Name
(RAP-DB) DNA glycosylase/AP lyase domain containing protein.
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Os06t0643600-01 (Os06g0643600)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dosa03400]
    Os06t0643600-01 (Os06g0643600)
Enzymes [BR:dosa01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Os06t0643600-01 (Os06g0643600)
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Os06t0643600-01 (Os06g0643600)
DNA repair and recombination proteins [BR:dosa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Os06t0643600-01 (Os06g0643600)
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH Fpg-like_C NFACT_N
Other DBs
RAP-DB: Os06t0643600-01
Position
chr06:complement(join(26232558..26232792,26232418..26232469,26232286..26232343,26231673..26231741,26231456..26231581,26231280..26231330,26231128..26231205,26230935..26231034,26230757..26230791,26230268..26230666))
AA seq 400 aa
MPELPEVEAARRALEAHCVGRRIARCAVADDPKVVVAAAGGRVAFERAMVGRTIVAARRR
GKNLWLRLDAPPFPSFQFGMAGAIYIKGVPVTKYKRSVVSSTDEWPSKYSKFFVQLDDGL
EFSFTDKRRFARVRLFEDPETVPPISELGPDALFEPMSSDSFADSLSRKKIGIKALLLDQ
SFISGIGNWIADEVLYQSRTHPLQIASSLSRESCEALHQSIQEVVKYAVEVDADCDCFPV
EWLFHHRWGKKPGKVNGQKIEFITAGGRTTAYVPQLQKLTGMQSSKVVIANPEQVAENDD
AKEIDTDPEDADNLNTKKRGATSRVARGKQKRDAIGALSRKTRKNGGGKEKPGSDYSEDD
GETAEPNKVSTSSKGEKADPVRRSSRTASKPRQVNKLKER
NT seq 1203 nt   +upstreamnt  +downstreamnt
atgccggagctgccggaggtggaggcggcgaggagggcgctggaggcgcactgcgtgggg
aggaggatcgcgcgctgcgcggtggcggatgaccccaaggtggtggtcgccgccgccggg
gggcgcgtggcgttcgagcgcgccatggtcggccggaccatcgtcgccgcgcggcggagg
ggcaagaacctctggctccgcctcgacgcccctccattcccctccttccagttcgggatg
gcaggtgcgatctacattaagggagttcctgtgaccaagtacaagagatcagttgtcagt
tctacagacgagtggccctccaagtactccaaattttttgttcaacttgatgatggctta
gagttttccttcactgataagaggcggtttgcaagagttcggttgtttgaagatcccgaa
actgtacccccgatttctgagttaggaccagatgctctctttgagccgatgtcttctgac
agttttgcggactcgctgagcagaaagaagattggaataaaagctcttctactcgatcag
agcttcatatcaggaattggtaattggattgcagatgaggtgctttaccagtcgagaacc
catccattacagattgcttcaagtctatccagggagagttgtgaagcactacaccaaagc
atccaagaggttgtgaaatatgctgttgaagttgatgctgattgtgactgctttcctgtg
gaatggttattccatcaccgatggggcaagaagcctggtaaagtcaatggacagaaaatt
gagttcataacagctggtggcaggactacagcatacgtgccacaactgcagaagctgact
ggaatgcaatctagcaaagtagtcattgctaacccagaacaagtggcagagaacgatgat
gcgaaggaaatagacacagatccagaagatgctgataatttgaatacaaagaagcgagga
gcaacttctagggttgccaggggaaagcaaaagagagatgccataggtgccctttccaga
aagacaaggaaaaatggtggtggcaaggagaaaccaggtagtgactatagtgaagatgat
ggtgagactgctgaaccaaacaaagttagcaccagtagcaagggcgagaaggcagatccg
gtgagaagatcatcaaggaccgcatcgaaaccccgccaggtaaataaattaaaagaaaga
tag

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