KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os08t0314800-01
Entry
Os08t0314800-01   CDS       T02163                                 
Symbol
Os08g0314800
Name
(RAP-DB) Similar to Poly(A)-binding protein.
  KO
K13126  polyadenylate-binding protein
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015  mRNA surveillance pathway
dosa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Os08t0314800-01 (Os08g0314800)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Os08t0314800-01 (Os08g0314800)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os08t0314800-01 (Os08g0314800)
   03041 Spliceosome [BR:dosa03041]
    Os08t0314800-01 (Os08g0314800)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     Os08t0314800-01 (Os08g0314800)
   mRNA cycle factors
    Stress granule specific factors
     Os08t0314800-01 (Os08g0314800)
Spliceosome [BR:dosa03041]
 Complex C
  Other components
   Complex C specific factors
    Os08t0314800-01 (Os08g0314800)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_7 RRM_3 BRAP2
Other DBs
RAP-DB: Os08t0314800-01
Position
chr08:join(13471940..13472216,13472961..13473079,13473162..13473821,13473928..13474005,13474091..13474180,13474483..13474620,13478127..13478297,13478399..13478605,13478700..13478942)
AA seq 660 aa
MAAQVQAVPAAEGGGAPPQANGVVAAGSAAAAAATFQATSLYVGDLDVSVQDAQLFDVFS
QVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEMLNFTPINGKPIRIMYSNRDPS
SRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAA
QNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGK
FGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSERE
MELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDLNGV
SKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFSQMRPMVMP
PSVAPRMPMYPPGVPGVGQQLFYGQPPPAFVNPQPGFGFQQHLIPGMRPSVGPIPNFVMP
MVQQGQQPQRPAGRRAGTGGIQQPMPMGHQQMLPRGSRGGYRYASGRGMPDNAFRGVGGL
VPSPYEMGRMPLSDAGAPPQVPIGALASALANSPPDQQRLMLGESLYPLVDQLEHDQAAK
VTGMLLEMDQTEVLHLIESPDALKAKVAEAMEVLRNAQQQQANTPTDQLAALTLSDGVVS
NT seq 1983 nt   +upstreamnt  +downstreamnt
atggcggcgcaggttcaggcggtgccggcggcggagggtggtggcgcgccgccgcaggcc
aacggggtcgtggctgcgggctctgctgccgccgctgcggcgaccttccaggcgacgtcg
ctgtacgtgggggacctcgacgtgagcgtgcaggacgcgcagctgttcgacgtcttcagc
caggtcggatcggtggtatcggtgcgcgtttgccgggacgtcaataccaggctgtcgctg
ggttacgcctatgtcaacttcagcagtcccgccgatgctgcaagggcattggaaatgctg
aacttcactcctattaacgggaagcctatcaggataatgtattctaaccgtgaccccagc
tcacgtaaaagtggagcagcaaacatatttattaagaatcttgacaagtcaatagataac
aaagctctctatgacacattttctgtatttgggaatattctttcgtgtaaagtcgcgacg
gaaatgtctggagagtcgaagggatatggttttgttcagtttgagctggaagaagctgcc
cagaatgctatcagtaagctcaatgggatgcttttgaatgacaaaaaggtgtatgtaggg
ccttttgttcgtaaacaggagagggaaaatgtatcaggcaatcccaaatttaacaatgtg
tatgtaaagaacctatcggaatcaacaactgaagataatttaaaggaaatttttggtaaa
tttggacccataactagtgtcgttgtaatgcgtgaaggtgatgggaaatctagatgcttt
ggatttgttaactttgaaaatccagatgatgctgctcgagctgttgaagatttgaatggc
aagaagtttgatgacaaggaatggtatgtttgtagagcacagaagaagtcagagagggag
atggaattgaaagaaaaatttgagaagaacatcaaagaggcagcagataagaaccaggga
actaacttgtatttgaaaaacttggatgatagcatcgatgacgatgagaaattaaaagaa
atttttgctgattttggtactattacctcttgtaaggtcatgagagatttgaatggtgtt
agtaaaggatctggctttgttgcatttaagtctgctgaagatgcttcacgagctcttgtg
gctatgaatggtaagatgattggcagtaaacctctctatgtagcacttgcacaacgcaag
gaagaaagaagggcaaggcttcaggcacagttctcacaaatgcgtcctatggtgatgcct
ccttcagttgctcctcgtatgcccatgtatccccctggtgtccctggtgtaggccaacag
ctgttttatggccagccacctccagcttttgttaaccctcagcctggatttggcttccag
caacatctcattcctggtatgaggcctagtgttggaccaattccaaattttgtcatgcct
atggtccagcaaggtcaacaaccacaacgtccagctggaaggcgtgcaggcactggtgga
attcagcaaccaatgccaatgggccaccagcaaatgcttccaaggggtagtcgtggtggt
taccgttatgcttctggtcgtggcatgccagacaatgcattccgtggtgttggaggttta
gtgccatccccatatgagatgggaagaatgcctctcagtgatgctggtgcaccaccgcag
gttccaattggagcattggcctctgcactggccaattcacccccagatcagcaaagactg
atgcttggtgaaagtttatacccgcttgttgatcagctggagcatgatcaggcagcgaag
gtcactggcatgcttttggagatggaccagactgaagttctccatctcattgagtcacct
gatgctcttaaggccaaggtcgctgaggctatggaagttctccgtaatgctcagcagcag
caggcaaataccccaactgatcagctagctgctctcaccctgagcgacggcgtcgtttct
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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