KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os09t0520100-01
Entry
Os09t0520100-01   CDS       T02163                                 
Symbol
Os09g0520100
Name
(RAP-DB) DNA polymerase delta, subunit 4 family protein.
  KO
K03505  DNA polymerase delta subunit 4
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03030  DNA replication
dosa03410  Base excision repair
dosa03420  Nucleotide excision repair
dosa03430  Mismatch repair
dosa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Os09t0520100-01 (Os09g0520100)
   03410 Base excision repair
    Os09t0520100-01 (Os09g0520100)
   03420 Nucleotide excision repair
    Os09t0520100-01 (Os09g0520100)
   03430 Mismatch repair
    Os09t0520100-01 (Os09g0520100)
   03440 Homologous recombination
    Os09t0520100-01 (Os09g0520100)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dosa03032]
    Os09t0520100-01 (Os09g0520100)
   03400 DNA repair and recombination proteins [BR:dosa03400]
    Os09t0520100-01 (Os09g0520100)
DNA replication proteins [BR:dosa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    Os09t0520100-01 (Os09g0520100)
DNA repair and recombination proteins [BR:dosa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      Os09t0520100-01 (Os09g0520100)
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     Os09t0520100-01 (Os09g0520100)
SSDB
Motif
Pfam: DNA_pol_delta_4
Other DBs
RAP-DB: Os09t0520100-01
Position
chr09:complement(join(20314233..20314407,20313928..20314148))
AA seq 131 aa
MASGGMKDFYRQKKKGGPTKASSSSKKKTQHYTGGASVGASDTAQTSALISHGNLDLKDD
FSEQEEQLRLFDMDMKFGPCIGVTRLQRWERASAMGLHPPPHLRDLLLNNTHAGNHNNNG
PSLECLWEGKV
NT seq 396 nt   +upstreamnt  +downstreamnt
atggcttctggtggcatgaaggacttttaccggcagaagaagaaaggaggtcccaccaaa
gcatcgtcatcttccaagaagaaaacacagcattacactggaggggcctctgttggggcc
tcagacactgctcagacatcagcactaatttctcatggtaacctagatcttaaagatgat
ttcagtgagcaagaggagcagttgcgactgtttgatatggacatgaagtttggcccttgc
attggcgttactcgtcttcagcgttgggaacgtgcttctgccatgggtcttcacccacca
cctcatctcagggatctcttactgaacaatactcatgcaggcaatcacaataacaatggt
ccctcccttgagtgcctctgggagggcaaagtctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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