KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os10t0489200-01Help
Entry
Os10t0489200-01   CDS       T02163                                 
Gene name
Os10g0489200
Definition
Similar to DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]).
Orthology
K10747  
DNA ligase 1 [EC:6.5.1.1]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Class
Genetic Information Processing; Replication and repair; DNA replication [PATH:dosa03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:dosa03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:dosa03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:dosa03430]
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
RAP-DB: 
UniProt: 
Position
chr10:complement(join(18558482..18559645,18558272..18558388,18557946..18558047,18557748..18557861,18556974..18557204,18556798..18556892,18556337..18556424,18555990..18556121,18555559..18555671,18555042..18555143,18554790..18554851,18554605..18554676,18554457..18554530,18554350..18554370))
AA seq 828 aa AA seqDB search
MFLLRATATSTSTAASAAAASLLLRCHHPLSPPPRTLALALPARPPPALLLPSRFRLSSS
ASSSSRRRATGAASASAGAGAGKGKGKGGKSSGGKAAAAAAAGGAAMSASAGGGGGGGGK
RTVADVLMGNARDAARKAKKGAAPSPKKLKTQPQPAAEADGGAVAKPEEKPHSPVKPKRS
SSPTKSNSPGEGKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEKRRSPS
PTKAKALASESQDIKKPSSPKKTKALDAPKSEEKDTTLELKKKGSEFNPMAAAYWSPEEP
VPFLFLARALDLISNESGRIVITEILSNVFRTVIATTPEDLLATVYLSANRIAPPHEGTE
LGIGDASIIRALAEAYGRREEHVKKNLKELGDLGLVAKASRLSQKMMYKPKPLTISHVLA
KFRTIAKESGKDSQDKKRNHIKGLLVAATDCEPQYITRLLQSKMRIGLAEKTVQMALGQA
AVYSEKHSPPSKIQSPFEEAAKIIKQVYSVLPIYDKIVPAILEVGVWKLPEICSFSIGVP
VGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIHCLEDGSVEIYSRNAERNTGKYP
DVVDAVSRFRKPTVKSFVLDCEIVAYDREKKKILPFQILSTRARKGVTISDIKVSVCTFG
FDILYINGKPLLQEQLKVRREHLYNSFEEVPGVFQLATSITSNDLEEIQKFLDTAVNSSC
EGLIIKTLDKDATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGSFL
LACYDEQNEEYQTICNIGTGFSEQQLEERSVSLRTKAIPKPKLCFHFF
NT seq 2487 nt NT seq  +upstreamnt  +downstreamnt
atgttcctcctccgcgccaccgccacctccacctccaccgccgcctccgccgccgccgcc
tcgctcctcctccgatgccaccacccgctctccccgccgcctagaaccctagccctcgcc
ctccccgctcgccctccccccgccctcctcctcccctcccgcttccgcctctcctcctcc
gcgtcctcctcctcccgacgccgcgcgaccggtgccgcatccgcatccgcgggcgcgggc
gcggggaaggggaaggggaaggggggcaagtccagcggggggaaggcggcggccgcggcg
gcggcgggaggagcggccatgtcggcctcggcgggtgggggtggaggtgggggagggaag
cggacggtggcggatgtgctgatggggaacgcgcgggacgcggcgaggaaggcgaagaag
ggggcggcgccgtcgccgaagaagctgaagacgcagccccagcccgccgcggaggcggat
ggcggcgcggtggcgaagccggaggagaagccgcattcgccggtgaagcccaagcggtcg
tcctcgccgactaagtccaactcgccaggtgaggggaagaggtccgaatcggtggctgct
ggcgcgaaaccggaggcgaaggagaagccctcgccgaagaagcctaaaaccctaggtgcc
aaatccgacaccaagtcctccgcggaaggcgttgagaaggagaagaggaggtcaccatct
ccgacgaaggcaaaagcgctagcttctgaatcccaggacataaagaagccctcctcacct
aagaagaccaaagccttggatgcccccaagtctgaggaaaaggacaccaccctcgagctc
aagaagaagggcagtgaattcaatcccatggctgctgcttattggagccccgaggagccc
gtgccgttcctgttcctcgctcgggcacttgacctcatctctaatgagtctggaaggatt
gttatcacggagatcctatcgaatgtattccgcacggtgattgccacaacaccagaggat
ctcctcgcgacagtatacctctcagccaaccggattgcgccgcctcatgaagggactgaa
cttggaattggggatgcatcaattatccgtgcacttgcggaggcatacggccgcagagag
gagcatgtcaagaagaacctaaaggagttgggcgatttggggcttgttgcaaaagcaagc
aggttgtcacagaagatgatgtacaaaccgaaaccactgacgatctcacatgtacttgca
aaattccggacaattgcaaaggaatcaggcaaagatagtcaagataagaaaagaaatcat
atcaaaggacttctcgttgccgcaactgactgtgaacctcaatacattacacgactactt
cagtcgaagatgaggattgggttagcagaaaaaaccgtccagatggctcttgggcaagct
gctgtgtattctgaaaaacattctccaccgtcaaaaatccaatccccttttgaagaggct
gcaaaaataattaaacaagtatattcagttcttccaatatacgataaaattgtcccagct
attctagaagttggtgtttggaaacttccagagatatgcagtttttctattggtgttcct
gttggtcctatgttggcaaaagcaacaaagtctgtctcagagatcatagacaaatttcag
ggtcttgagtacacttgtgagtacaagtatgatggtgaacgggctcagatacattgcctg
gaagatggatcagtagagatctatagtcgtaatgctgagaggaacactgggaagtatcct
gatgttgttgatgcggtttctagattccggaagcctacagtcaaatcatttgtcttggac
tgtgaaattgttgcttatgaccgtgaaaagaagaaaatattaccttttcagatacttagc
acacgggcccgcaagggtgttaccataagtgatatcaaagtgtcagtctgtacttttggc
tttgatattctttacatcaatggcaagcctcttctccaggaacaactgaaagttcgacga
gagcatctttacaactcctttgaggaagtaccaggtgtttttcaattggcaacttcaatt
acatcaaatgacctcgaggagatacaaaaatttcttgacacagctgtcaactccagttgt
gaagggttgattatcaagacattggataaggatgctacatatgagccagcaaaacgatcg
aacaattggttgaaattgaagaaagactacatggacagcattggagactctttggatttg
gtgccaattgctgcctttcatgggagaggaaaacgtacaggtgtatatggatcattcctc
ctggcatgttacgatgagcagaacgaagaataccaaacaatctgcaacataggcactgga
ttttctgagcaacagcttgaggagcgttctgtgagccttcgaactaaagcaataccaaaa
ccaaagttgtgctttcattttttttag
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