KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os11t0143400-00
Entry
Os11t0143400-00   CDS       T02163                                 
Symbol
Os11g0143400
Name
(RAP-DB) DNA-directed RNA polymerase, RPB5 subunit domain containing protein.
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03020  RNA polymerase
dosa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Os11t0143400-00 (Os11g0143400)
  09124 Replication and repair
   03420 Nucleotide excision repair
    Os11t0143400-00 (Os11g0143400)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dosa03021]
    Os11t0143400-00 (Os11g0143400)
   03400 DNA repair and recombination proteins [BR:dosa03400]
    Os11t0143400-00 (Os11g0143400)
Transcription machinery [BR:dosa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     Os11t0143400-00 (Os11g0143400)
  RNA polymerase III system
   RNA polymerase III
     Os11t0143400-00 (Os11g0143400)
  RNA polymerase I system
   RNA polymerase I
     Os11t0143400-00 (Os11g0143400)
DNA repair and recombination proteins [BR:dosa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Os11t0143400-00 (Os11g0143400)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DnaT
Other DBs
RAP-DB: Os11t0143400-00
Position
chr11:complement(join(2017557..2018150,2016636..2016812,2016291..2016404,2015635..2015760))
AA seq 336 aa
MSHSSPYQQSFTTIESAESATAATSIETAESTTAARDVSPPPAAAPAARDVSPPAAASAA
RDVSPPPAAARDVSPPSAAHDVSPPAAVSAPPPAVVPAAARDAPPPAVAMAAEMEVDDVD
VHEVPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKP
GIERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSR
AREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRML
ETDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCVF
NT seq 1011 nt   +upstreamnt  +downstreamnt
atgagtcactcctccccctaccagcaatccttcacgacaatagaatcggctgagagcgcg
accgccgccacctcaatagaaaccgccgagagcaccaccgccgcccgcgacgtttcccct
cctcccgccgccgcccccgccgcccgcgacgtttcccctcccgccgccgcctccgccgca
cgcgacgtttcccctcctcctgccgccgcccgcgacgtttcccctccctccgccgcacac
gacgtttcccctcccgccgctgtctccgcccctcctcctgccgtcgtccccgctgctgcg
cgcgacgctccccctcccgccgtcgccatggcggcggagatggaagtcgacgacgtcgac
gtgcatgaggtccccgaatgcatagcatcgatgatcgaccgcggcagcgtggagagccac
cgcctgttcctggcgcgccggacggcgatggagatgctccgcgaccgcgggtacagcgtg
ccggaggccgagatcgcccgcaccctccctgagttccgcgcctggtgggctgagaagccc
gggatcgaacgcctcgccttcaccaccaccctcgtctccgacccctccaagaaggtacaa
cttgtattctgtccaccagagcctgtcaaaatcgcaactatccgagagatatatctccaa
acaaaagaagagaacttgtccaggcttgttctgatactgcagagcaaaatattatctaga
gctagagaggctatcaaggagatctttaaatttaaagtggacatattccaggccacagat
ttactggtaaacattactaagcatgtcctgaaacccaagcatgaagtgttgagtgcagat
caaaaggccaagctcctcaaggaatacaatgtggaagactcacagttgccacgcatgcta
gagactgatgctgttgctcgctactatggctttgacaagggaaccgtggttaaagttata
tatgacggtgaacttactgggaagcgtgtggcataccgatgcgtcttctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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