KEGG   Dendroctonus ponderosae (mountain pine beetle): 109537702
Entry
109537702         CDS       T04899                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
dpa  Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03018  RNA degradation
dpa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dpa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109537702
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109537702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpa03019]
    109537702
   03041 Spliceosome [BR:dpa03041]
    109537702
Messenger RNA biogenesis [BR:dpa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109537702
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109537702
Spliceosome [BR:dpa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109537702
SSDB
Motif
Pfam: LSM LSM14
Other DBs
NCBI-GeneID: 109537702
NCBI-ProteinID: XP_019760112
EnsemblRapid: LOC109537702
Position
Unknown
AA seq 95 aa
MITNDVQMTFFGLILDHGPIKLVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVT
EYETTPEGRRITRLDQILLNGNNITMLVPGGDMPE
NT seq 288 nt   +upstreamnt  +downstreamnt
atgataaccaatgacgtccaaatgacattttttggtcttatactggaccatggaccaata
aaactagtggacaaatgcattggttcccgaattcatattatcatgaaaaatgacaaggaa
atcgtcggaacactgctgggatttgacgactttgtaaacatgctcttggaagatgtgaca
gagtacgaaacaacccctgaagggagacgaataaccagattagaccaaatactgttgaac
ggaaataatattaccatgctagttcctggtggagacatgcccgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system