KEGG   Dendroctonus ponderosae (mountain pine beetle): 109539365
Entry
109539365         CDS       T04899                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
dpa  Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dpa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109539365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpa03019]
    109539365
Messenger RNA biogenesis [BR:dpa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109539365
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     109539365
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DUF5646 FHIPEP DUF2433
Other DBs
NCBI-GeneID: 109539365
NCBI-ProteinID: XP_019762621
EnsemblRapid: LOC109539365
UniProt: N6U281
Position
Unknown
AA seq 649 aa
MAATRKLQGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRD
QIKSWIASGEIKDKSILMDNRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKE
KEEMQHWLSSSIDELSIQTDSFESEIEQLLSKGKKKLDKDKQERMDELKSRLERHRFHIQ
KLEALLRMLVNESVEVKQIKPIKDNVDYYIESWKEPDFEDNEFIYDDIIGLDEVELSGVG
LPSSATTDSNDTGGTPTSMISGSSPIASPGPSIPQNCSSFNHSIEPILPEEKKVVQKEVQ
QTPKPIKPTPIRATTTSFNTSLNTSLVISNVASTAPTMTSTPNKTAPAAREPSPVMSNLT
TVSNFAAVAANNINKSLNNVDVPPINVPQQVVTNLNVVPPKAPVEVQNVVPTIEPPAPPA
PIAITNPEPPPVIANGTDNNEKISDGMSTLKTMAQQVIDRAGLEAQPPQPQVILDPPRNH
SHVKTEAHIPPLLGVAPLGAVPLQKEHQTQFQLMESAFYHMPHPSDTERVRHYLPRNPYN
TPPYYIQAPLFNSDTLEFYQRLGTETLFFVFYYMEGTKAQYLAAKALKKQSWRFHTKYMM
WFQRHEEPKIINEEYEQGTYIYFDYEKWGQRKKEGFTFEYKYLEDRDLN
NT seq 1950 nt   +upstreamnt  +downstreamnt
atggcggctaccagaaaactacaaggtgaaatagatcggtgtctaaaaaaagtgaccgaa
ggcgttgagactttcgaggacatctggcagaaagttcataatgccacgaatagtaatcag
aaggagaagtatgaggcagacctcaaaaaggaaatcaagaagttgcaaaggcttcgagat
caaatcaaaagttggatagcttcaggggaaattaaggataaaagtattttgatggataat
aggaagcttattgaaactcaaatggagaggtttaaagtggtcgaaagagagacaaaaaca
aaagcgtattcaaaagaaggattaggtgctgctcagaaacttgatccggctcagaaggaa
aaagaagaaatgcaacactggctaagttcgtccatagatgaattatcaatacagactgac
tcctttgaaagtgagattgaacagctgctatcaaaaggaaagaagaaactggataaggac
aaacaggaaagaatggacgagttaaaatctcgactcgaacgacatcggtttcacatacaa
aaactagaggctcttttaagaatgctcgttaatgaatctgttgaagttaagcaaattaaa
cctataaaggacaatgtagattactacatagagtcgtggaaagaacccgactttgaagat
aacgaattcatttatgatgatatcattggcctggatgaagtggaattgtctggtgtgggt
ttaccttcttcagctacaactgacagtaatgatacaggaggtacacctacatcgatgatt
tctggttcttcgccaattgcctctcctgggccaagcattccccaaaactgttctagtttt
aatcattccattgagcccatcttaccggaagagaagaaagtcgtgcagaaggaagtccag
caaacgcctaagcccatcaagcccacgccaattagagcaaccactacgtcctttaatacg
agcttaaatacatcgttggttatttcaaatgttgcgtccacagcgcccacaatgaccagc
acgcccaataaaacagctccggccgctcgagagccttcgcctgtgatgtctaatttgacg
actgttagcaatttcgctgccgttgccgcaaacaacattaacaagtcgttgaacaatgtg
gatgttccgcccatcaatgttccacaacaggttgttactaatctgaacgtggtcccacca
aaggcgccggtggaagttcaaaatgttgtacctactattgaaccgccagcgccgccagca
cccatcgccatcaccaatcctgaacctccgccagttattgcgaacggaactgataataat
gaaaagatctcagatggtatgtcaacgttgaaaacgatggcacaacaggtgatagacaga
gcgggcttagaagcacaaccgccacaacctcaagtaattttagaccccccaaggaaccat
agtcatgttaaaacggaggctcacatacctcccctgcttggtgtggctcctcttggcgct
gttcctctacaaaaagaacatcagactcagttccagctgatggagtctgccttttatcac
atgccacatccgtccgatacggagagggttcgacattatctgccgaggaatccttataat
acacccccatactatatacaggcgccattatttaattcggacactttggagttctaccaa
cgactgggaacggaaacgctatttttcgtcttttactatatggagggaactaaagctcaa
tacttggcagctaaggcgttgaagaaacaaagttggaggttccacacgaagtacatgatg
tggtttcaacgacatgaggagccaaaaattattaacgaggagtatgaacagggcacctac
atttactttgattacgaaaaatggggacagagaaaaaaagaaggatttacatttgaatat
aagtatctagaagatagagaccttaattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (99)   
   KEGG ORTHOLOGY (1)   
   RefGene (94)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (117)   

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