KEGG   Candidatus Babela massiliensis: BABL1_gene_479
Entry
BABL1_gene_479    CDS       T02948                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
dpb  Candidatus Babela massiliensis
Pathway
dpb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dpb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BABL1_gene_479 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dpb03021]
    BABL1_gene_479 (rpoB)
   03400 DNA repair and recombination proteins [BR:dpb03400]
    BABL1_gene_479 (rpoB)
Enzymes [BR:dpb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BABL1_gene_479 (rpoB)
Transcription machinery [BR:dpb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BABL1_gene_479 (rpoB)
DNA repair and recombination proteins [BR:dpb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BABL1_gene_479 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RelB CDC24_OB3 zinc-ribbons_6
Other DBs
NCBI-ProteinID: CDK30540
UniProt: V6DG51
Position
complement(481558..485886)
AA seq 1442 aa
MSNLRKGNEPVRRSFGKIKDIVSVPNLIEIQSRSFNDFIQLDYLPSERKLMGLEKVFKDI
FPIDYDNKMSLEYVSYELGNWACTCGKLTGIINRYTWNCLNCDKSDCSRLNEHLECNFCH
KNTARYRTCPNCLSRVTVQLPMTLEECRSSGQTFAMPLKVKMQLVAWDVDQDNNKLLRDI
KEQDIFFADVPVMADLYEQDGQFKLGNLGTFLINGIDRVIVSQLHRSPGVVFSQSKKVKE
LRSKPYYLARLIPMRGSWIDFEYDNNDFLNVRIDKKKKMLATTLLQALGVAREEIISLFY
QFDTIYFENGEFYQIINDSLLGLRIEKGMLPYLKDEDNFVGKRLTKDTIALLLRQDVNRI
VLRKSNLLNRVFASDVINPQTGEFIVEQGAIFAEEHYDLLKNFDKLQFNLIKSSGYVLQP
TIALTLAQDKCYTEEDALREVHTKIWPGDSSSLKEIKDRLRALFFDNRLYDLTKVGRIRL
NRKLNISVNEEILALTLDDIIATIRYLVNLRERGEGELDDIDHLGNRRVRLVGELLNNQI
YTGLLKVEKIVRERFRIQEVHAALMPQDFLNVKPLNAVLREFFGTGQLSQFMDQTNPLAE
IAHKRRLSALGPGGVMKDRATFEVRDVHNSHYGRICPIETPEGQTVGLISSLSTYAFVND
LGFIETAYRPVKDGKMLDDVVFLDAFEESDKYIAESNSVDVETKILKGDYVFARHEGNFL
YVDKNKINYVDLSPKQLVSVSTALIPFLEHDDATRALMGANMQRQAVPLIKVQAPIVATG
MEPEIARSSGSVILAKRPGVVEYVSADKIVIRANQDSFKNIDDWISQGVDTYYLKKFQRS
SYSTWIHQTPIVTQGDIVKENDILTNGSSISDGELALGANLLVAFMPWHGYNFEDAIILN
KRLVADDTLTSVHIDEYIVDARDTKLGPEEITRDIPNVSEAALEGLDEDGIVRVGTRVKP
GDILVGKVTLKGDIQYSPEEKLLRAIFGEKAREVRDTSLRVPPGVEGSVIDVKVFSRSGM
RKDRRYKEVVAQETAKLESDNNMHVATLEKMVIQKTISLLSDEIAFAKAPKNLLSDNKYI
ESKLSELPLKELWTLKADDKAINDEIAYIKSSFENQIRILMGLKEERINRLRKGDVLPSG
VIKMVKVYIAMKRPVAVGDKMAGRHGNKGVVSIIVPREDMPHMEDGTPVDIVLNPVGVPS
RMNVGQILETILSFSGRKIGEEVSKLLNTNAWNQTLKLLKNSYGEELIKDYEDKYGKEGL
EDLAQKTSKSGVLFETPIFDSANFNHDIKPILKGLNLPETGTFRLKDGRTGDYFDQPVTV
GSIYMMKLNHMVDDKLHARSVGPYSLVTQQPLGGKAQLGGQRFGEMEVWALEAHGASYAL
QEMLTYKSDDIIGRHKVYEALVRNDEVPEPGLPESFNVLIKELQSLGLRIDLFKSGKEEV
SE
NT seq 4329 nt   +upstreamnt  +downstreamnt
atgtctaacctacgtaaaggtaatgaacctgtacgtcgatcttttggaaaaattaaagat
atagtttcagttcctaatttgattgagattcaatctcgttcttttaatgattttattcaa
ttagattatttgccatcagaacgtaaattaatggggttggaaaaagtttttaaggatata
tttccaatcgattatgacaataaaatgtcgcttgagtatgtaagttatgaattgggtaat
tgggcttgtacttgtggtaaattgactggtattataaatagatatacttggaattgttta
aattgtgataaatctgattgctcacgtttaaatgaacatctagagtgtaatttttgccac
aaaaatactgctcgttatagaacttgtcctaactgcttatctcgagtgactgttcaactt
ccaatgaccttagaagaatgtcgttcaagtggtcaaacatttgcgatgcctttaaaggtt
aagatgcaattagtagcatgggatgttgatcaagataataataaattacttagagatatt
aaagagcaagatatattctttgctgatgtgcctgttatggctgatctttatgaacaggat
gggcaatttaaattaggtaatttaggtacttttttaataaatggtattgacagagtaata
gttagtcaattacatcggtcaccaggtgttgtattttctcaaagtaaaaaagttaaagaa
ttaaggtcaaaaccatattatttagctcgtttgataccaatgagaggttcctggattgac
tttgaatatgataataacgattttttaaacgttagaatcgataagaagaagaaaatgttg
gcaacaacattgcttcaagctttaggggtggcaagagaagaaattatttctttattttat
caatttgatactatttattttgaaaatggtgagttctatcaaattattaatgatagcctt
ttaggattacgtattgaaaaaggaatgttgccttatcttaaagatgaggataattttgtt
ggtaaaaggcttactaaagatacaatagctttgcttttaagacaagatgtaaacagaatc
gtcttacgtaaatctaatctacttaatagagtttttgcttctgatgtaataaatcctcaa
acaggagaatttattgtagagcaaggcgctatctttgcagaagagcattatgatttatta
aaaaattttgataaattacaatttaatttaattaaatcttctggttatgttttacaacct
actatagcacttactcttgctcaagacaaatgttatacagaagaagatgctttaagagaa
gttcatactaagatttggcctggagatagctcttctttaaaggaaattaaagatcgttta
agagctttatttttcgataatcgtctttatgatttaactaaagtaggaagaataagatta
aacagaaagttaaatatttctgttaatgaagaaattttagcattaactttagatgatatt
attgccactattagatacttggtaaatttaagagaacgcggcgaaggtgagctagatgat
atagatcatttaggaaataggcgtgttagattagtaggtgaattgcttaataatcaaata
tataccggcttactaaaagtagaaaagatcgttagagaaagatttagaattcaagaagtt
catgctgctttaatgcctcaagactttttaaatgttaaacctttaaatgctgtacttaga
gaatttttcggaactggtcaactatctcaatttatggatcaaactaatccattggcagaa
atagctcataagcgaaggttgtcagctttagggcccggcggtgtaatgaaagatagagct
acttttgaagttcgagatgttcataactcgcattatggtcgtatttgtcctatagaaact
cctgaaggccaaactgttggtttaatttcttctttatctacttatgcttttgtaaatgat
ctaggatttatagaaactgcatatagaccagtaaaagatggtaagatgcttgatgatgta
gtatttttagatgcatttgaggaaagtgataaatatatagcagaatctaattctgttgat
gtagagactaaaattttaaaaggagattatgtttttgctcgtcatgagggtaatttttta
tacgtagataagaataaaattaattacgtagatttatctcctaaacagttagtatcggtc
tcaacagctttaataccgtttttagaacatgatgatgctacacgtgctttaatgggagca
aacatgcaacgtcaagctgttcctttaattaaagtacaagctcctatagtagctacaggc
atggagcctgaaattgctagatcttcgggttctgtaattcttgcaaagcgtcctggagtg
gttgaatatgtctcagcagataagatagtaattagagctaatcaagattcatttaaaaat
attgatgattggatatctcagggtgttgatacttattatttaaagaaattccaaagatct
agttatagtacgtggatacatcaaactcctatagtaactcaaggagatatcgttaaagaa
aatgatattttaactaatggtagttctatttctgatggtgaattagcattaggtgctaat
ttattagtagcttttatgccttggcatggttataactttgaagatgctattattttaaat
aaaagattagtggctgatgatactttgacgtccgttcatatagatgagtatatagtggat
gcacgtgatactaaattaggacctgaagaaattacaagagatattcctaatgttagcgaa
gcagctttagagggtcttgatgaagatggtattgtaagagttggaactcgtgtaaaaccg
ggagatattttagtaggaaaagttacgcttaaaggggatattcaatattctcctgaggaa
aaactattaagagcgatatttggtgaaaaagcaagagaagttagagatacttccttaaga
gtcccaccgggagtagaaggaagtgtaatagatgttaaagtcttctcaagaagtggtatg
cgtaaagatagacgttataaagaagtagttgctcaagaaactgctaaattagagtctgat
aataatatgcatgtggccactttagaaaagatggtaatacaaaagactatatctctactt
tcagatgaaattgcttttgccaaagcacctaaaaacttattatctgataataagtatatt
gaaagcaaattaagtgaattaccgcttaaagagctctggacattaaaagccgatgataaa
gctataaacgatgaaatagcctatattaaatcttcttttgaaaatcaaattagaatttta
atgggattgaaggaagaaagaattaacagattaagaaaaggtgatgttcttccatcaggt
gttataaagatggttaaagtttatatagccatgaaaagaccagtagcagttggtgataaa
atggcaggacgtcatggtaataaaggtgttgtatctataattgttcctcgtgaagatatg
cctcatatggaagatggaactccagtagatatagtattgaatccagtaggtgtaccatct
cgtatgaacgttggtcagatacttgaaactatattaagtttttctggtagaaaaattggt
gaagaagttagtaaattattaaatactaatgcttggaatcaaactttaaagctattaaaa
aattcttatggtgaagaattaattaaagattatgaagataagtacgggaaagaaggtctt
gaagatttagctcaaaaaacatcaaagtcaggagttttatttgaaacacctatttttgat
agtgctaattttaatcatgatattaagcctatcttaaaaggtttaaatttacctgaaaca
ggtacatttagactgaaagatggtagaactggtgattattttgatcagcctgtaactgta
ggttctatatatatgatgaaactaaatcatatggttgatgataagttacatgctcgttct
gtaggaccatattctcttgttactcaacaacctcttggtggtaaagcacaattaggtggt
caaagatttggagaaatggaagtatgggctcttgaggctcatggggcatcttatgcttta
caggaaatgcttacttataaatcagatgatattataggtcgtcataaagtatatgaagct
ttagtcagaaatgatgaagttccagaaccgggtcttccagaatcgtttaatgttttaatt
aaagagcttcaaagtcttggtcttcgtatagatttatttaagagtggcaaggaggaagtc
agtgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (51)   

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