KEGG   Deinococcus puniceus: SU48_10425
Entry
SU48_10425        CDS       T04339                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
dpu  Deinococcus puniceus
Pathway
dpu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dpu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SU48_10425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dpu03400]
    SU48_10425
Enzymes [BR:dpu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SU48_10425
DNA repair and recombination proteins [BR:dpu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      SU48_10425
SSDB
Motif
Pfam: DEAD Helicase_C CarD_TRCF_RID TRCF ResIII UvrB_inter UB2H
Other DBs
NCBI-ProteinID: ANE44119
UniProt: A0A172TAR9
Position
complement(2280762..2283899)
AA seq 1045 aa
MTVAAPNLAKLLPAAPVGNLVLLPQVARAALFSAHAGPAVLLTTPDRAALYGSAGVLGAP
VTVNPGLRDWDTRHQHVVLDVNTALDLFPARPEDHALSLRVGNTYPREELLARLERLGYE
RDEEPGYQLRGDTVELRLEPGAGVPADAEAVWIRAEFFGDELDTLRQLVPGEMTGDKIKE
FVLEPTADYLTDVKWDATRLELLPGRVFLDAPEFYASSLGPLTDVLWTRLREREVTSFGR
APLELTDFNLDLVVLPFYRARLSDLERDITEWRGAGYRVLILVRHDRTAAYLADKLLNTH
EIPWLSIPRVPEGGLGFLRAAGEGGFVIPEHRTVVLTEDLIYGFQGGSALRGKRLNGKPV
TDALGLHVGDYLIHPEHGIGQFQGLETRTVLGVTRDYLNLEYRAGARLSVPIEQLPVLRR
HPGTTDDPPVLSSFDKKDWARAKERARKNAEEVAGKLLVQYAARQVTPGNSFPPQPEWDS
MVEANFKFELTADQKTSLKETMRDLEAANPADRLISGDVGFGKTEVALRAAHRVIGHGKQ
VAILVPTTLLAEQHTSTFVERFKSLPVRVEGLSRFTGDKQAKAILAELAQGKVDIIIGTH
RLLSADIQFKDLGLIIVDEEHRFGVSQKEKLRALRGMPDTKDGKLDIPEGTKAVDTLALS
ATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTILAPFDPVTVRDAILSEIERGGKVFYI
HDRIASIGARSLYLRNLIPEARIGVAHGRMNEEELEEIMMGFEQGAFDVLVSTTIVETGL
DIPEANTILIERSDRLGLAQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQRRLWAIADLQ
DLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTEMLAEAVARLKGEKTKAPASV
SIDLPINARLSPEYFATPEGQPDDEARIAAYGRLSEARTLQAVSRVERDLRKKYGPPSPE
VQNFIDLSKLRMTALAKRALSIGETMTHIQITFAYKSLDYDAAGLRNYPHRTEVQTFPPS
VKLEKRGIKPDDYARTLIDLLGYFG
NT seq 3138 nt   +upstreamnt  +downstreamnt
gtgacggttgccgctcctaatcttgccaaactcctgcccgctgccccggtgggcaatctc
gtgttgctgccgcaagtggcgcgggcggcgctgttttcggcccacgctggccccgccgtc
ctgctcaccactccagaccgggcggccctctacggttcggcgggcgtgctgggcgcaccc
gtaacggtcaatcccggtttgcgcgactgggacacccggcaccaacatgtagtgctggac
gtaaacacggcgctggacttgtttcccgcccgccccgaagaccatgccctcagcctgcgc
gtgggcaacacttatccgcgtgaagagttgctggcccgcctagaacgcctcggctacgaa
cgcgatgaagaacccggctaccagttgcgcggcgacacggtagaactgcgtctggaaccc
ggtgcaggcgtgcccgccgacgccgaagccgtctggattcgggccgaattctttggcgac
gagctggacaccttgcgccaactggttcccggcgagatgacgggtgacaagatcaaagag
tttgtgctggaacccaccgccgactacctgaccgatgtgaaatgggacgccacccggctg
gaactcttgccggggcgggtcttcttggacgccccggagttctatgcttcctcacttggc
cccctcaccgacgtgttgtggacgcgcctacgcgaacgggaagtgacttcgtttggccgt
gccccgttggaactgaccgatttcaaccttgatctggtggtgctgccgttttaccgtgcc
cgcctgagtgacctagagcgtgacattaccgagtggcgcggtgcgggttaccgagtcctg
attctggtgcgccatgaccgcacggcggcgtatctggccgacaaattgctgaatacgcat
gagattccgtggctcagcattccccgcgttcccgaaggcggcctcggcttcctgcgggcg
gcgggcgagggcggcttcgtcattcccgaacaccgcaccgtcgttctcaccgaagacctg
atctacggctttcagggcggcagtgcgctgcgcggcaagcggctgaacggcaaacccgtc
accgacgcgctaggcctgcatgtgggcgattacctgattcaccccgaacacggcatcggg
cagtttcaggggctggaaacgcgcacggtgctgggcgtcacccgcgattacctgaatctg
gagtaccgcgcaggcgcacgcctcagcgttccgatagagcaattgcccgtgctgcggcgg
catcccggtaccactgacgacccgcccgtgttgagcagtttcgacaaaaaggattgggcg
cgggccaaagagcgggcacgtaagaatgccgaggaagtggccggaaaactgctggtgcag
tacgcggcccgccaagtgactcccggcaacagctttccgccgcagcccgagtgggattcg
atggtggaggccaacttcaagtttgaactcaccgccgatcagaagacgtcgctgaaagag
acgatgcgcgatctggaggccgccaaccccgcagaccgcctgatctccggcgacgtgggt
ttcggcaaaaccgaggtggcgctgcgggccgcccaccgcgtcatcgggcacggcaaacag
gtggcgatcttggtgcccaccacgttgctggccgagcagcacacgtccacgttcgtagaa
cgcttcaagagcctgcccgtgcgggtggaaggcctgtcacgcttcacgggcgacaagcag
gccaaagcgattctggccgagttggcacagggcaaagtggacatcatcatcggcacgcac
cgcctgctcagcgccgatattcagttcaaagatttgggcctgatcatcgtggacgaggaa
caccgcttcggcgtgagtcagaaggaaaaactgcgtgccctgcgcgggatgcctgacacc
aaagacggcaagctggacattccggagggaacgaaggcggtagatacgctggcgctctcg
gccacgcccattccgcgcacgctgtacatgagcatggtgggtctgcgcgacatgagcagc
atccagaccccgcccaagggccgcaaacctatccagaccatcctcgcgcccttcgatccg
gtcaccgtgcgcgacgccatcctctcggaaatcgagcgcggcggcaaagtcttctacatc
catgaccgcatcgcctctatcggcgcacgcagcctgtatctgcggaacctgattcccgaa
gcgcgaattggcgtagcacacgggcgcatgaacgaagaggaattggaagaaatcatgatg
ggcttcgaacagggcgcgttcgatgtgttggtgtccaccaccatcgtcgaaaccgggctg
gacattccagaagccaacacgatcctgatcgagcgcagtgaccgcctcggcctcgcgcag
ctttatcagctccggggccgggtgggacgccgtgcccagactgcctacgcctacctgttc
tatccgccgcgcatgaccgaaaacgcgcaacgccgcttgtgggccattgccgacttgcaa
gacctcggatcggggcacctgctggccgaaaaagacatggaaattcgcggcgtgggcaac
attctgggcgaggagcagcacgggcatgtgcaggccgtgagcatcgacgtgtacaccgaa
atgctggccgaagcagtggcccgcctgaaaggggaaaagaccaaagcgcccgccagcgtg
tctatcgatttgcccatcaacgcccgcctgtcgcctgaatactttgccacgccggaaggg
cagcccgacgacgaagcccggattgccgcgtatggccgcctgagtgaagcccgcaccctg
caagccgtgagccgtgtagaacgcgatctgcgaaaaaaatacggcccacccagccccgaa
gtccagaatttcatcgatctctccaaactccgcatgactgccctcgccaaacgtgcactc
agcattggcgagaccatgacgcacattcagatcacctttgcttataagtcgctggattac
gacgcggcaggcctccgcaattacccacaccgtaccgaagttcaaacgttcccgcccagt
gtcaagctagagaagcgcgggattaagcccgacgactatgcccgcacgctcatcgatctt
ctgggctacttcggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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