KEGG T01004: 30140

Danio rerio (zebrafish): 30140

Entry

30140 CDS T01004

Gene name

clock, zCLOCK1, zfCLOCK1

Definition

clock (EC:2.3.1.48)

Orthology

K02223

circadian locomoter output cycles kaput protein [EC:2.3.1.48]

Organism

dre Danio rerio (zebrafish)

Pathway

dre05168

Herpes simplex infection

Class

Human Diseases; Infectious diseases; Herpes simplex infection [PATH:dre05168]

SSDB

Motif

Pfam:

PAS_11 PAS_3 HLH PAS PAS_9

Other DBs

NCBI-GI:

NCBI-GeneID:

ZFIN:

UniProt:

Position

AA seq 893 aa
MTSSIDRDDSSIFDGLMEEDEKDKAKRVSRNRSEKKRRDQFNVLIKELGTMLPGNTRKMD
KSTILQKSIDFLRKHKEIAAQSESSEIRQDWKPPFLSNEEFTQLMLEALDGFFLAIMTDG
NIIYVSESVTSLLEHLPSDLVDQNLLNFLPLGEHSEVYKALSTHMLEGETLTPDYLKTKN
QLEFCCHMLRGTIDPKEPPVYEYVKFIGNFKSLNTVPNSTRNGFEGVIQRSLRHAFEDRV
CFIATVRLAKPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSG
YDYYHVDDLETLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFI
VCTHTVVSYAEVRAEQRRELGIEESPPEISADKSQDSGSESQLNTSSLKEALERFDHSRT
PSASSRSSRKSSSHTAVSDPTSTQTKLQTDRSTPPRQSVSAIEMTSQRRSSISSQSMSSQ
TTGQTMGTSLVSQPQQPQTLQATVQPVLQFSTQMDAMQHLKEQLEQRTRMIEANIQRQQE
ELRQIQDELQRVQGQGLQMFLQPSGGGLNLSSVQLTQSSSVQTAGTLSMQGAVVPTATLQ
SSLQSTHSSTQHTVTQHPQQTAVQQQNLLRDQTTNLNQQSQRSTHTLQSPQGALPASLYN
TMMISQPTQANVVQISTSLAQNSSTSGAAVDLLTKDPTDYRFPATQQLLTKLVTGPMACG
AVMVPTTMFMGQVVTAFAPQQGQPQTISIAQQPSAQTADQQTHTQAQTQAAATAQQQGQN
QAQLTQQQTQFLQAPRLLHSNQSTQLILQAAFPLQQQGTFTTATQQQQQLHQQQQQLQQQ
QQLQQQQQQQQQQLQQQHQQQQQQLQQQHQQQQQQLAAHRSDSMTERSNPPPQ

NT seq 2682 nt +upstreamnt +downstreamnt
atgacctccagcatagaccgggatgacagcagtatctttgatgggttaatggaagaagat
gagaaggacaaagcaaaaagagtttctagaaataggtcggagaagaagaggcgagaccag
ttcaatgtgctcatcaaggaactgggcaccatgttgccgggcaacacccgcaagatggac
aagtctaccatcctacagaagagcatcgacttcctgcgcaagcacaaagaaattgctgca
cagtcggagtcgagtgaaatccgtcaggactggaagccacccttccttagcaatgaggag
ttcacacagctgatgctggaggcactagatggcttctttctggccattatgacggatgga
aacataatctacgtctcagaaagtgtcacgtctttattagaacatctaccttctgatctt
gtggatcagaacctgttgaatttccttccactgggtgagcattcggaggtgtataaagct
ctgtcaacacacatgttggagggagaaaccctcaccccagactacctaaagacaaagaac
cagttggagttttgttgccacatgctccggggcaccatcgaccccaaagagccgcccgtt
tatgaatatgtcaagttcatcggaaactttaagtccctcaacactgtgcctaactcaaca
cgaaacggctttgagggagtgatccagcgatcgctgcgacacgcgtttgaagaccgagtg
tgtttcatagcgacggtcaggctagccaaacctcagtttatcaaggaaatgtgtactgtg
gaggagcccaatgaggaattcacctccagacacagtttagagtggaaattcctcttcttg
gaccacagggcgcctcctatcattggttacctgccgtttgaggttctgggtacttcaggg
tacgactactatcatgtggatgacctggagactttggccaaatgccacgaacacttgatg
cagtacggtaaggggaagtcgtgctattaccgttttctgactaaaggtcagcagtggatc
tggcttcagacgcactactacatcacctaccaccagtggaactcaaggccagagttcatc
gtctgcactcacacggtggtcagttatgctgaagtgagagctgaacagcgcagagagctg
ggcattgaagaatcacctcctgagatctccgcagacaagtctcaggactctggctccgag
tctcagttgaacacctccagcttgaaggaggccctagagcgattcgatcacagccgcaca
ccctcagcctcgtcacgcagctcccgcaagtcctcctcgcacaccgctgtctctgacccc
acctccacacagaccaagctgcagacagatcgcagcacaccacctcgccaatcagtgtca
gccattgagatgacatcacagcggaggtcctccattagcagtcagtcgatgagttctcag
accacaggacagacgatgggaacatctcttgtgtctcagcctcagcagcctcaaacactt
caggccaccgttcagccggtgctgcagttttccacacagatggatgcaatgcagcatctg
aaggagcagctggagcagcgcacacgcatgattgaggcaaacatccagagacagcaggag
gagctacggcagatccaggacgagctgcagagggttcaaggacagggtttacagatgttt
ctgcagccgagtggtggtggattgaacctcagctcagtgcagctgacacagagctcatct
gtacagacagcaggcactctgtccatgcagggggcagtggtgcctacggcgaccctgcag
agcagcctgcagtccacacacagcagcacacaacacacggtcacacagcatcctcagcag
acagcagtgcagcagcagaacctgctccgagaccagaccaccaacctcaaccagcagtct
cagaggtcgacccacacactgcagtctcctcagggtgctctgcctgcatctctatataat
accatgatgatctctcagccgacacaggccaatgtggtccagatctccacaagcctggcc
caaaacagcagcaccagcggagccgccgtcgaccttctcaccaaggatccgacagattac
cggttccctgccacccaacagctcctcactaagctagtaacaggccctatggcatgtggt
gcagttatggttcccaccaccatgttcatggggcaggtggtgacggcgtttgcccctcag
cagggtcagcctcagactatcagcattgctcagcagccgtcagcgcagacagccgatcag
cagacccacacacaggcacagacacaggccgcagcaacagcccagcagcagggacagaac
caggctcagctcacacagcagcagacgcagttccttcaggccccacgtcttttacatagc
aaccagtctacccagctgatcctccaggcggcgtttcctcttcaacaacaaggcacattc
acaaccgcaacacaacaacagcagcaacttcaccaacaacagcagcaacttcagcagcag
caacaactccaacagcagcagcaacaacagcagcagcagcttcaacagcagcatcaacaa
caacaacaacagcttcaacagcagcatcaacaacagcagcagcaactggcagctcatcgc
tccgacagcatgacggagcgctccaaccctccgccacagtaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (3)   
   UniGene (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (23)   

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