KEGG   Danio rerio (zebrafish): 321127
Entry
321127            CDS       T01004                                 
Symbol
ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
  KO
K13179  ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dre03041]
    321127 (ddx18)
   03009 Ribosome biogenesis [BR:dre03009]
    321127 (ddx18)
Enzymes [BR:dre01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     321127 (ddx18)
Spliceosome [BR:dre03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    321127 (ddx18)
Ribosome biogenesis [BR:dre03009]
 Eukaryotic type
  90S particles
   Helicases
    321127 (ddx18)
  Pre-60S particles
    321127 (ddx18)
SSDB
Motif
Pfam: DEAD Helicase_C DUF4217 ResIII AAA_22 Helicase_C_2
Other DBs
NCBI-GeneID: 321127
NCBI-ProteinID: NP_001003411
ZFIN: ZDB-GENE-030131-9685
Ensembl: ENSDARG00000030789
UniProt: Q6DRL1
Position
9:38315067..38352207
AA seq 653 aa
MADMQMKILRKKIQKISEKNKQRKLLQSQKEEENSEEVKDVLDESEVASDSAPNVIEEQQ
QSVSDEVNETSQKPKKKKKKRKLDATGESTTSSVKKAKKQSVDTTQASAGEEEQQEEGNL
ETVKCPENGNNEKEGSAEEDSDEDGPQLPSGLTGAFEDRSFASLSEVVSENTLKGVKEMG
FDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGTGVIVLS
PTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGVNILVATPGRLLDHLQN
TPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQSMLFSATQTRKVEDLARIS
LKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSV
KFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIV
QFDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELGFLRFLKQAKVPLSEFEFSWTKI
SDIQSQLDKLIEKNYYLHKSAQEAYKSYVRAYDSHSLKQIYNVETLDLPKVAMSFGFKVP
PFVDLNVHSSKGVKLHKRGGGGGFGYQKSKNVHKAKIFKHVNKGKGDGRQFSR
NT seq 1962 nt   +upstreamnt  +downstreamnt
atggcggacatgcagatgaagattcttcgcaagaaaattcaaaagataagcgaaaaaaat
aaacaacgcaaactgctgcaatctcagaaagaagaagaaaacagcgaagaggtgaaggat
gttttggatgaatctgaagtggccagtgattctgctccaaatgtcatcgaagagcagcag
caaagtgtctcggatgaagtgaacgaaacctcacagaaacccaagaagaagaaaaagaaa
cgaaaattagatgctactggagaatcaacaacatccagtgtaaaaaaggctaaaaagcag
agtgtagacacaacacaggcatctgcaggtgaggaagagcagcaggaagaaggaaattta
gagactgtgaagtgtccagagaatggaaataatgaaaaagagggatcggctgaggaggat
agtgatgaagatggaccacaacttccttctggtctgacaggtgcgtttgaggaccggtca
tttgcatccttgtcagaagtggtcagtgagaacacgctgaagggagtgaaggaaatgggc
tttgacaccatgactgaaatccagcacaagaccatacgccctttgctggaggggagagac
gtgttggcagcagctaaaacaggaagtggcaaaactctagctttcctgattccctcaatt
gagcttatctataagctgaaattcatgcctagaaatggcactggagtgatagttctgtct
cctacacgtgagttggctatgcagacgtacggcgtgctgaaggagttgatgacccatcac
gtccacacatacggcctcatcatgggtggcagcaatcgctctgctgaagcccagaaactc
gctaatggagttaatatcttggtagcaacacctggcagacttctggatcacctgcagaac
actcctggcttcatgtttaaaaaccttcagtgtctgatcatcgatgaggctgacaggatt
ctggaggtgggatttgaagaagaactgaaacagatcatcaaactacttcctaaaaaaaga
cagtctatgttgttttctgcaacacaaacacgtaaggtggaagatcttgcacgaatctcc
cttaagaaggagccgctgtatgtgggagtggacgataataaagacacagccactgttgaa
ggactagaacagggatatgttgtgtgtccttcggagaagcgttttctgctgctgttcact
tttctgaagaagaatcgcaagaagaagctgatggtgtttttctcatcctgcatgtcggtg
aagttccactatgagctgctcaattacatcgatctgcccgtcatggctattcatgggaag
cagaaacagacaaagagaaccacaacgtttttccagttctgtaatgcagattctggcatt
ctcctctgtacggatgtggctgccagaggtttggatatccccgaagtagactggattgtt
cagtttgacccacctgatgatcctaaggagtacatccatcgtgttggacgaacagctcgt
ggtattaatggaagaggacatgcactgctgatcctgaggccagaggagcttggcttttta
cgattcctcaagcaggccaaagttcccctgagtgagtttgaattctcctggacaaaaatc
tcagatattcaatctcagttggataaactgatcgagaaaaactactaccttcacaaatca
gctcaggaggcctacaaatcctatgtcagagcttatgattctcattcccttaagcagatc
tataatgtagagacgctggacctcccgaaagtggcaatgtcctttggatttaaagtgcca
ccttttgtggacctcaatgttcacagcagtaaaggagtgaagctacataagagaggtgga
ggcggcggcttcggataccagaaatctaaaaacgtccacaaggccaagatcttcaaacat
gtcaacaaaggcaagggagacggcagacagttttcacgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (6)   
   Pfam (6)   
All databases (48)   

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