KEGG   Danio rerio (zebrafish): 321744
Entry
321744            CDS       T01004                                 
Symbol
nup88
Name
(RefSeq) nucleoporin 88
  KO
K14318  nuclear pore complex protein Nup88
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    321744 (nup88)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    321744 (nup88)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     321744 (nup88)
SSDB
Motif
Pfam: Nup88 Sec23_trunk Syntaxin-6_N Nup54
Other DBs
NCBI-GeneID: 321744
NCBI-ProteinID: NP_001018302
ZFIN: ZDB-GENE-050522-297
Ensembl: ENSDARG00000003235
UniProt: A2CEI4
Position
5:complement(59089699..59111962)
AA seq 720 aa
MASLAGDRWREALKNHDIFNNLQERLHLEPQGTSKRIAKNLTFCLNGDLFIWDSVESVFY
TTNLRQLNSDGEPDTSRYQTLLCINPPLFEVCLVLVSPSQYHVALIGQRGATVLELPQRW
GKKSEFEGGRIQINCKTIPVAERFFTSSASVTLRQAVWYPSETEEPHLVLLTSDNTIRFY
NLKEPQSPAKVLSVSQLDDDSSVHTRSRSYAASLGETAVAFDFGPLADSPHLSSLRMKAE
LVVYPLYILYGNGETFLNYISLSHSVGSLGKPMGPLPMYPAAEDNYGYDACAVLCLPCVP
NILVIATESGMLYHCVVLEAEEEEDGGAVERWSRGSETAPSLYVFECVELELTLKLPAGE
EEEITESDFTCPIRLHRDPLCQHRYHCTHEAGVHSVGLTWFKKLHKFLESDEEDKDSLQE
LAAEQRCIVEHILCTRPLANSLPAPVRGFWIVSDLSLGATMICITSTYECLLLPLLSSIR
PASPPLLCSHPGAGSDSSPLRGLAEDSFEQHIRNILARSSTNPLMLRSGDKDSSPPPSEC
LQLLSRATQVFREEYILKLGLAHEEMQRRVKLLSGQKNKQLEDLALCREDRKSLTEAAER
LADKYEDAKYRQEAIMNRVKRVLGSLRSQLPVLSDSEKDMRKELQTINDQLRHLDNGIKQ
VNMKKDYQKKQMNAGASPAHSSLTLNAHQRKCLQGVLKEQGEHTAGMMKQIKDIKNHFSF
NT seq 2163 nt   +upstreamnt  +downstreamnt
atggcgtcgcttgcgggagatcgttggagggaagcgctgaagaaccacgatatattcaat
aatttacaagaaaggcttcatttagagcctcaggggacaagtaaaagaatagctaagaac
ctgacgttttgtttgaacggtgatctgttcatttgggacagcgttgagagcgtgttttac
accacaaacctgcgacagctgaactctgacggcgaaccagacacctccagatatcagacc
ctgctgtgcatcaacccgccgctgttcgaggtgtgtctggtgctcgtcagcccctcgcag
tatcatgtggccctcatcggtcagcgaggagccactgtcctggagctgccacagcgctgg
gggaagaagtccgagtttgagggcggacggatccagatcaactgcaagaccattccggtg
gctgaacgcttcttcaccagttctgcgtctgtgactcttcgtcaagctgtctggtatccc
agtgaaactgaggagcctcatctcgttctgctgacctcagataacaccatcagattttat
aatcttaaggagccccagtcccctgccaaagttttatctgtgtctcagttggatgatgac
agcagcgtccatacaagaagtcgttcttatgcggcctctttgggagagacggcggtggct
tttgactttggtccgttggctgattctcctcacctgagcagtctgcgaatgaaggcagag
ctggtggtttatccactctacatactatacggcaatggagagacctttctgaactacatc
tctctctcacacagtgtcggtagtttagggaagccgatgggcccgttacccatgtaccct
gcagcagaagataactatggctacgatgcgtgtgctgtgctctgcctgccttgcgtgccc
aacatcctggtcatcgccactgaatcaggaatgctgtatcactgtgtggtgctggaggca
gaggaagaggaggatggcggagctgtagagagatggtccagaggctcagagacggcacct
tcgctctacgtatttgagtgtgtggagctggagctgacacttaaactgcctgctggagaa
gaggaggagattacagagtcagacttcacctgtccaatcagattacatcgagaccctctg
tgtcagcacaggtatcactgcacccatgaggctggggtgcacagtgttggactcacctgg
ttcaaaaaactacacaagtttctggagtctgatgaggaggataaagacagtctgcaggag
ctggcggcagagcagcgctgtatagtagagcacatcctatgcacaagacctctcgctaac
agtttgccggctccagttcgcgggttttggatcgtgtcagacctgtccctgggagccacc
atgatctgcatcacgagtacctacgagtgtctcctgctccctctgctaagctctattcgc
ccggcttctcctccgctgctgtgctctcatccaggggcggggtcagacagctctcctctg
cgtggattggctgaagactcctttgaacagcatatccgcaacatcctggcacgcagctcc
accaatccattaatgctgaggtcgggtgataaggactcgtctcctcctccttctgaatgt
cttcagctgttgagcagagccacacaagtgttcagagaggagtacatcctcaagctgggc
ctggctcatgaagaaatgcagagaagagtaaagctcctgagcggacagaagaacaagcag
ttggaggatcttgctctttgtagagaggacagaaaaagcctgacagaagctgcagagcga
ctggcggataaatatgaagatgccaaatatcgtcaagaagccatcatgaacagagtaaag
cgggttttgggaagtctgcggagtcaacttcctgtgctgtcagacagcgagaaagacatg
aggaaggaactgcagaccatcaatgatcagctccgtcaccttgacaacggcatcaaacag
gtgaacatgaagaaagattaccagaagaagcagatgaacgcgggagcatctccggctcac
tccagcctcactctaaacgcccaccagaggaagtgtttgcagggagtgctgaaagaacaa
ggagagcacaccgctggcatgatgaagcagatcaaggacatcaaaaaccatttcagcttc
tga

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