KEGG   Danio rerio (zebrafish): 321931
Entry
321931            CDS       T01004                                 
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    321931 (dhx15)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dre03041]
    321931 (dhx15)
   03009 Ribosome biogenesis [BR:dre03009]
    321931 (dhx15)
Enzymes [BR:dre01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     321931 (dhx15)
Spliceosome [BR:dre03041]
 Complex A
  U2 snRNP components
   U2 related factors
    321931 (dhx15)
 Complex B
    321931 (dhx15)
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    321931 (dhx15)
Ribosome biogenesis [BR:dre03009]
 Eukaryotic type
  90S particles
   Helicases
    321931 (dhx15)
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 Atrophin-1 nSTAND3 AAA_25 SRP54 Flavi_DEAD AAA_29
Other DBs
NCBI-GeneID: 321931
NCBI-ProteinID: NP_001108613
ZFIN: ZDB-GENE-030131-650
Ensembl: ENSDARG00000015392
UniProt: E7F3I8
Position
7:complement(71278614..71331508)
AA seq 769 aa
MSKRHRLDLGDEYSSSKKRSSDGKDRDRDRDERSKDRDRDRDRERDRDRDRDRDRDRERD
SKSSSAALSSSVSGSGILPLKQASMHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERF
NDILNRHQSFVLVGETGSGKTTQIPQWCVDMVRSLPGPKRGVACTQPRRVAAMSVAQRVA
DEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERT
LATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPE
PERDYLEAAIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREIDDLGPDVGDIKII
PLYSTLPPQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKV
YNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSN
LGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFP
LDPQLAKMVIASCDFNCSNEVLSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLT
LLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYY
INIRRALVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNY
IRTCTDIKPEWLVKIAPQYYEMSNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq 2310 nt   +upstreamnt  +downstreamnt
atgtcaaaacgacatcggttggatttaggtgatgaatattcgtcgagcaagaagaggtcg
tctgacgggaaggaccgtgacagagatcgggatgagcgatcaaaggatcgagatcgtgac
cgggaccgtgagcgcgatcgtgacagagaccgagaccgcgatcgcgaccgagagagagac
agcaagtcgtcgagtgcggcgctcagctccagcgtgtctggaagcggaatccttcctctg
aagcaggccagcatgcatcagcagatcaaccccttcaccaacctgcctcacacgccacgc
tactacgagatcctcaagaagaggctgcagttgcccgtctgggagtataaagagcgcttt
aatgacatcctgaaccgccatcagagctttgtgctcgtaggagagaccggctctggaaag
accacacagatccctcagtggtgtgttgacatggtcaggtctctgcctggcccgaagcgc
ggcgtggcctgtactcagcccagaagggtggcagccatgagtgtggctcagagagtggca
gatgagatggatgtcatgctgggtcaggaggtcggatactccatcagattcgaggactgt
agctctgcaaagaccatactaaaatatatgacagacggtatgttactccgtgaggctatg
aacgaccccttactggagcgatacggtgtcattattcttgacgaggcccacgagcgcacg
ttagccacagatattctgatgggcgtcctcaaggaagtggtccgacagagatctgacctt
aaggtcattgtaatgagcgccactctggatgccggaaagttccaggtttattttgataac
tgccccttgctgaccattcccggccggacacatccagtggagatcttctacacacctgag
cctgagcgggactacctggaggcggccattcgcacggtcatccagatccacatgtgtgag
gaggacgagggagatgtgctgctcttcctcactggacaggaggaaatcgacgaagcctgc
aaaaggatcaaacgtgagattgacgatctcggccctgatgttggagacattaaaatcatc
ccgctctactccacactgccaccacagcagcagcagaggatctttgagcctccaccgcct
cgcaaacccaacggagccatcggcaggaaggttgtggtttctacaaacatcgctgaaacg
tccctgaccatcgatggcgtggtgtttgtaattgatcctggctttgccaagcaaaaggtg
tataaccctcgcattcgagtcgaatcgctgcttgtgactgctattagcaaggcttcggcc
cagcagagggcaggtcgtgccggacgtacacgcccgggaaagtgcttccggctctacact
gagaaggcctacaagacagagatgcaggataacacctaccctgagattctcaggtcgaat
ctgggctctgtggtgctacagctcaagaagctcggtatcgatgaccttgtgcactttgac
ttcatggatccaccagctcccgagaccctaatgcgagccctggagctgttgaattatctt
gcggcgctgaatgacgacggtgacctgacagagctgggctccatgatggccgaattccct
ctcgacccccaactggccaagatggtcatcgccagctgcgatttcaactgctccaatgaa
gtcctctccatcaccgctatgctatcagtcccacagtgctttgtgcgtcccaccgaagct
aagaaggctgctgatgagtccaaaatgaggttcgcccacatcgacggggaccacctgacc
ttgctcaacgtctaccacgccttcaaacagaaccacgagtcggtgcaatggtgctacgat
aacttcatcaactaccgctcgctgatgtcggctgataatgtgcggcagcagctttctcgg
atcatggaccggttcaacttaccccgacgcagcacagagttcaccagccgagactattac
atcaacatccgccgcgctctggtcaccggcttcttcatgcaggttgctcacctggagcgc
accggccactatctcacagtgaaggacaaccaggtggtccagttgcacccgtccaccgtt
ctggaccacaagcccgagtgggtgctttacaacgagtttgtgctgaccaccaagaactac
atccgcacctgcactgatataaagcccgaatggctggtgaaaatcgctccacaatactac
gagatgagcaacttccctcagtgcgaggctaagaggcaactggaacgtatcgtggctaaa
cttcaaaccaaggagtactctcaatactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (13)   
   Pfam (13)   
All databases (61)   

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