KEGG   Danio rerio (zebrafish): 327495
Entry
327495            CDS       T01004                                 
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b
  KO
K12875  apoptotic chromatin condensation inducer in the nucleus
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03013  Nucleocytoplasmic transport
dre03015  mRNA surveillance pathway
dre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    327495 (acin1b)
  09122 Translation
   03013 Nucleocytoplasmic transport
    327495 (acin1b)
   03015 mRNA surveillance pathway
    327495 (acin1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    327495 (acin1b)
   03041 Spliceosome [BR:dre03041]
    327495 (acin1b)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     327495 (acin1b)
Spliceosome [BR:dre03041]
 Complex C
  Other components
   EJC/TREX
    327495 (acin1b)
SSDB
Motif
Pfam: RSB_motif SAP
Other DBs
NCBI-GeneID: 327495
NCBI-ProteinID: NP_001292511
ZFIN: ZDB-GENE-030826-12
Ensembl: ENSDARG00000026842
UniProt: F1Q511
Position
7:24069328..24097012
AA seq 1259 aa
MAELEDVTLDGKPLHSLRVADLKTALEERGLAKSGQKNALIKRLKGALMLENLQRSSTCH
SGIQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREATEADESQSPAGPEEDDNDS
TSFLLEKHHIAHAHLSAGGGLPQDPGLVGSQKLDTGPVPVSQESSDSKAGRIWHPSFPSG
HEDVATPSPPRAVASLSVRVVGQPERQGLPPRSQEREGTAPVEAGPAHSMLQLSRSARAA
GGAQVDSDDDDDEEDDDDSEDDDEWGPASHGKKNVRAPPARAPPAAAPQRSRRKLQPPQH
IPPQLQPVLQPPLQLRQPTPPPSPPPELSFPLPDTPKQSPHDQDEPAGLAEAAVPGPGMV
SPPSLTRQESSSSSRSSSPEPPSTRKPGPLSLLVRKMESEGVFGSAQNIEVKGEGDMEVE
EQEHSEAAVQDSTRELSRTDVSSSVSTMPPDQQGIQDSELEKGEDEPKPSEETQNEKVDE
TSVPLCSTSTTTRSSRRQRIFSEVPPPESLMSPSKPEQLSMLTSISKGSEDSPMETEEFT
TTPASKHKEDKELKGLNNEAPEESPKPADENKKALTSPHATSEEEKMDKTRDRSKKDKRR
SSTSSQSSSSDADSESSSSHSSSSPSRDKSSPTSKTKDVEEKGRKGAEEKKAQSSREVKQ
EALSEPTGQVAMELEGLSHSESAVQQSDHQGADSSDSRPEESSAAKSFAARKISLSSKTE
IASSESEPVGGASRKRRWGSSTAVTAKKPSISITTESLKTLIPDIKPLQEAVVDLHPDEG
RLSVDEDSSGPREREEPEEDQGLKIRRTVTQIVPSDGHENGQKEMDEKDEEEDEDDEEEE
QKHSGEEKEKPRKQESSPDASVETPECDSQKVTPSDSLVRRSISQQKSGVSITIDDPIRT
GRQLSPPRGKTSNIIHVLHLVRPFTLGQLKLLLNRTGTMVEEGFWIDKIKSHCYVTYSTV
EEAVATREALHGVKWPASNPKVLRVDFSDQDELDFHKGLISGERAGVGHDPKASGPSSRP
PAAHPPIPPPNHEKEKERERDRDGGSSAVRDQWAERERAMERRERTRSEREWDRDKVKDF
GREERDRTRRSRSRERRRRERGKSKEKRTEKKEKPEEPPVKLLDDLFHKTKAAPCIYWLP
LTDEQATQRDQERADRIKEREKRRKEIFEEEDKKRKEREQERAKGRDRVGGNTAETRAGV
PRRSTEGERDRGKGGERERGREADKRKDAQRGQRDSKTTTAAGNRRSQSHNSTSRDRRH
NT seq 3780 nt   +upstreamnt  +downstreamnt
atggcggaactcgaggatgttacgttagacggaaaaccgcttcattcgcttcgtgttgcg
gatttaaaaaccgccctggaagaaagagggctcgcaaaaagtggacagaaaaatgcactt
attaaacgactgaaaggggcactgatgttggagaatctccaacgatcttcaacctgtcac
agtggtattcagcccaactcacagattggagaggagatgagtcagaacagctttataaag
cagtacttggccaaacagcaggagctcctcagacagagactggagagagaagcccgggag
gccaccgaggcagacgagtcacagagtcctgcaggcccagaggaggatgacaacgatagc
acttcattcttattagagaaacatcacattgcacatgctcatctgtcagctggaggaggg
ctcccacaggaccctgggttagtaggatcacagaagttagatacaggccctgttcctgtc
tcccaagagtcatctgacagtaaagctgggaggatctggcatccttctttcccctctgga
catgaggatgtcgctacaccctcccctccacgagcagttgcctccttgtctgtacgtgtg
gttggacaacctgagcgccaaggcctgccgcctcgttcacaagaaagagagggaacggcc
ccagttgaagcaggtcctgcccattcaatgctgcagctcagtcgttctgcaagggcagca
ggtggtgctcaagttgacagtgatgatgatgatgatgaagaggacgatgatgacagtgag
gacgatgatgagtggggtccggcctcgcatgggaagaagaacgtacgggctcctccagca
cgtgctccaccagccgctgccccccaacgctcccgtcgaaaacttcagcccccacaacac
atccctccccagcttcagccagtcctccagccacctctgcagctccgtcagcccactcct
ccaccatctccacctccagagctctcattcccattacctgatactcccaaacagagtcca
catgaccaagatgagccagcgggcctagcggaagctgctgttccagggccaggcatggtc
tctcctccatccctcacacgacaggagtcaagctccagttctagatctagcagcccagaa
cctccatccacacgcaaacctggtccccttagcctcttggtccgcaaaatggagtctgaa
ggtgtgtttggtagtgcacagaacatagaggtgaagggtgaaggggacatggaagttgaa
gagcaggaacatagtgaagcagcagtgcaagactcaactcgggagctttctaggacagat
gtgtcctcctcagtatccacaatgccccctgatcaacaaggtattcaagattctgagttg
gagaaaggggaagatgagccaaaaccaagtgaggagacgcaaaatgagaaagtggatgag
acttctgtaccattatgttcgacttcgaccaccacgcgctcatctaggaggcaacgcatt
ttctctgaggtcccaccacctgagtcactcatgtcaccttccaaacctgagcagttgtca
atgctcacctccatttcaaaaggctctgaagattctcccatggaaacggaggaatttaca
acaacgcctgcatcaaaacacaaagaggacaaagaattgaagggtttgaataatgaggca
ccagaagagtcacctaaaccagcagacgaaaataaaaaggccctaacttcacctcatgct
acatctgaagaagaaaagatggataaaacaagagaccgttcaaagaaagataaaagacgc
tcctcaacatcaagtcagtcgtcatcatctgatgcggattcagaatcatcttcctctcat
tcttcaagctctccttcacgtgataaatccagcccaaccagcaaaacgaaggatgtagaa
gagaaaggacgaaaaggtgctgaagaaaagaaggctcagtcttcaagggaggtaaagcag
gaagctctctctgagcctacaggccaagttgccatggaactggagggcctctctcattca
gagagtgctgtgcaacagtccgaccaccagggggcagattcaagcgactcccgcccagag
gagagctctgctgcaaaatcgtttgctgcccgcaagatctccctgagcagtaaaacagag
attgcatcatctgagtcagagccggtggggggagccagcaggaagagacggtggggttcc
agtacagcagtcacagccaagaaaccatcaatcagcatcaccactgagtcgctgaagaca
ttaattccagacatcaagcccctgcaggaggcagtagtggatttgcacccagatgagggc
cgtctctctgtggatgaggactcctctggccctcgtgaacgagaggaaccggaagaggat
cagggcctgaaaatcagacgcacagtgacacagattgttccatctgatggacacgagaat
ggccagaaagaaatggacgagaaggatgaggaggaagatgaagatgatgaagaagaagag
cagaaacactcgggagaagaaaaggagaaacctaggaaacaggaaagctcacctgatgct
agtgtggaaacaccagaatgtgattctcaaaaagtcacacccagtgattctttagtaagg
cgctccatcagtcagcagaagtcaggtgtgtccatcactatcgatgaccccatacgaacg
ggccgccagctttctcctcctcgtggaaaaacctccaacatcatacatgtccttcacctg
gtgcggcctttcaccttaggccagctgaagttattattaaatcggactggcacaatggtg
gaggagggtttctggattgataagatcaagtctcactgttatgtcacatactccactgta
gaggaagcagtggccactcgagaagcactacatggtgtgaaatggccagcaagcaatccc
aaagtactacgtgtggacttcagtgaccaggatgagttggactttcacaaaggtctgatc
tctggtgaacgtgcgggtgtaggtcatgaccctaaagcctcaggaccgtccagccggccc
cccgccgctcatccaccgatccctcctccaaaccatgaaaaagagaaggaacgcgagaga
gacagagatggaggttcttcagctgtcagagaccagtgggctgagagagaaagggccatg
gagaggagagagaggacccgttctgagcgggagtgggatcgggataaagtcaaggatttc
gggcgggaggagcgagacagaacgagaaggtctcgatcgagggagcgaagacgcagagag
agaggcaagagtaaagagaagaggacggaaaagaaagaaaaaccagaagagcctcctgtt
aaactgctcgatgacctcttccacaaaactaaagcggctccctgtatatactggttaccc
ctcacagatgaacaggcaacacagagagatcaggagcgagccgaccgcatcaaggagcga
gagaagaggaggaaggaaatctttgaggaagaagacaaaaaacgaaaagaaagagagcaa
gagagagcaaaaggccgcgaccgagtgggaggaaacacagcagaaaccagagctggagtt
cccagacggtcaaccgaaggggagagagaccgagggaagggcggagagagagaaagagga
agagaggcggacaagaggaaagatgcacagagaggccaacgtgactccaaaaccaccaca
gcagcgggcaacagacgctcgcagagccacaacagcacctccagagacagacgacactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (69)   
   KEGG ORTHOLOGY (1)   
   RefGene (63)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (89)   

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