KEGG T01004: 334839

Danio rerio (zebrafish): 334839

Entry

334839 CDS T01004

Gene name

gtf2h4, wu:fa04h09, zgc:77721

Definition

general transcription factor IIH, polypeptide 4

Orthology

K03144

transcription initiation factor TFIIH subunit 4

Organism

dre Danio rerio (zebrafish)

Pathway

dre03022	Basal transcription factors
dre03420	Nucleotide excision repair

Module

dre_M00290

Holo-TFIIH complex

Class

Genetic Information Processing; Transcription; Basal transcription factors [PATH:dre03022]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:dre03420]

SSDB

Motif

Pfam:

Tfb2 Helicase_C_3 SinI

Other DBs

NCBI-GI:

NCBI-GeneID:

ZFIN:

Ensembl:

Vega:

UniProt:

Position

AA seq 466 aa
MKLRVQLQCKNLHEYLKELTPEILDRLYNHPATCLAVYRELPPLAKNYVMRMLFLDHPLP
QAAVALWVKKGSQKDHDQCVSVLTGLRLWHSQHLQGGLQGFVLNPVFKDNLRIALLGGGK
PWADEGANLGPDRHARDVESLDRYAMERWEVILHFMVGSPSAAVSQDLAQLLIQAGLMKS
ETGEAPCITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLAAGVTANPASGSASSALG
AIPGTGDTGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNLVVAQVTRESVQQAIS
NGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELEKDRLQFTEGVLYNQFLSQA
DFEVLRDRAQGLGVLVWQNPAHRVMVVTPHGHSEVKRFWKRQKSHS

NT seq 1401 nt +upstreamnt +downstreamnt
atgaagcttcgcgttcagcttcagtgtaagaacttgcacgagtatctgaaagaactgacc
ccagaaatcctcgacaggctctacaatcacccagcaacatgtctagcagtatacagggaa
cttccaccactggcaaagaattacgtgatgcgcatgctgtttttagaccatccactcccc
caggctgcggttgccctgtgggttaaaaaaggcagtcaaaaagaccatgatcaatgtgtg
tcggtgttaactgggctacggctctggcacagtcagcatcttcaaggtggacttcaaggt
ttcgtgctcaaccccgtgtttaaggacaacctgagaatagcacttctaggcggtggtaaa
ccgtgggcagacgagggtgccaatctgggtcccgatcggcatgcgagggatgtagagagt
ctggaccgctatgctatggagcgctgggaggtcatccttcacttcatggtgggctctcct
agcgcagctgtcagtcaggatctggctcagctcctcatacaggccgggctcatgaagagc
gagactggtgaggctccatgcatcacatcagcagggtttcagttcctgctgctggacacg
gcatctcagttgtggtacttcaccctgcagtacctcaaaacagcacagtcgagaggaatg
gacctggtggagattctttcctttttgttccagctgagtttttccactcttggaagggat
tattctgtggagggcatgagcgagtccctgctcacatttttgcagcatctacgagagttt
ggtctggtttttcaaagaaagaggaagtcaagaaggtactaccctacgagactcgccata
actctcgctgcaggagtcactgcaaacccagcctcgggatctgcctcttctgcactggga
gcaataccaggaacaggagacactggattcatcgttgtagaaactaattatcgcatatat
gcctatacaaactctgaacttcagattgcactggtcgctctgtttagtgagatgttgtat
cggtttcctaacctggtggttgcacaggtcacccgagagtctgtgcagcaggccatcagt
aacggcatcaccgcacagcagattattcacttcttacggacccgagcacacccagttatg
cttaaacagacccccgttctccccccaaccatcacagatcagatcagactgtgggagctt
gagaaagatcgcttgcagtttaccgagggagtgttatacaaccagtttttatcccaggct
gatttcgaagtgttgcgggacagggctcagggtttaggagtgctggtgtggcagaatccc
gctcacagggtcatggtggtgactcctcatggacacagcgaggttaagagattctggaag
agacaaaaaagccattcataa

All links

Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (1)   
   ENSEMBL-DRE (1)   
   OC (1)   
   VEGA (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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