KEGG   Danio rerio (zebrafish): 337866
Entry
337866            CDS       T01004                                 
Symbol
supt6h
Name
(RefSeq) transcription elongation factor SPT6
  KO
K11292  transcription elongation factor SPT6
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    337866 (supt6h)
   03036 Chromosome and associated proteins [BR:dre03036]
    337866 (supt6h)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     337866 (supt6h)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    Other Histone chaperones and regulators
     337866 (supt6h)
SSDB
Motif
Pfam: SH2_2 YqgF HHH_7 HTH_44 SPT6_acidic Spt6_S1 Tex_N S1 HHH_3 HHH_9 SH2 Tex_YqgF
Other DBs
NCBI-GeneID: 337866
NCBI-ProteinID: NP_660094
ZFIN: ZDB-GENE-030131-7949
Ensembl: ENSDARG00000006524
UniProt: Q8UVK2
Position
21:26028939..26058547
AA seq 1726 aa
MSDFIESEAEESEEEFEEKDLKPKKTQRFMEEDEEEEEENTEDQDEHGNLRGLIDDDDVE
EEEEEERGEPPAGEDSDSGEEVRHRRRKRSFDDYLDDDDLDLIEENLGVKVKRRKKKYSR
VKTMDDEGDDDDEKDLIADEIFTGDGDGEGEVEDGEAVDTLHPRDDEEEEDDEESDIDDF
IVDDDGQPITKKKGKKFSGYTDAALQEAQEIFGGDFDFAEFDTEAYDHAEEEEEDQDDES
WDRPKKQTKRRVSRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRAIPVKPAEDD
ELEEEAEWIYRNAFSTPTISMQESTDYLDRGTTTNFSRKGPSTIAKIKEALNFMRNQHFE
VPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLTRLFQRMQSYQFEQISADP
DKPLADSTRPLDTADMERLKDVQSIDELGDVYNHFLLYYGRDIPKMQNAAKGGKKKLKKI
KEVSEEDGEEAEVEEEEEEEEQKGPDLKQASRRDMYSICQSAGLDGLAKKFGLTPEQFGE
NLRDSYQRHETEQFPAEPLELAKDYVCSQFNTPEAVLEGARYMVAMQIAREPLVRHVLRQ
TFQERAKINIKPTKKGKKDVDEAHFAYSFKYLKNKPVKELSGDQFLKMCLAEEEGLLAID
ICIDLVGVKGYGDQTYFDEIKQFYYRDEFSHQVQEWNKQRTLAIERSLQQFLYPQMAKEL
KNKLIAEAKDNIVKSCCKKLYNWLKVAPYRPDQQVEEDDDLMDESQGKGIRVLGVAFASG
RDTPVFCSLINGEGEVVDFLRLPYFLKRRNAWREDEREKKQQDVENLKKFLLSKKPHVVA
VSGENRDAHMVMEDIKRTISELEQNSSLPVVGVELVDNELAVLYMNSKKSEADFRDYPPL
LRQAVSVARKIQDPLVEFAQVCSTDDDILCLKLHPLQEHVVKEELLSALYCEFINRVNEV
GVDVNRAIAHPYTQSLVQYICGLGPRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFI
NCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGAL
EEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRAPYRPPNTEEV
FNMLTKETPETFYIGKLITCVVTNIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPEL
SEVWNHFDSGSCPGQAIGVRTRLDNAVMGFIPTKFLSDKVVKHPEERVKPGMTVHCRIMK
IDIEKFNVDLTCRTSDLSDKNNEWKLPKDTYYDFDAETDDVKQEEEQKKKQQRTTYIKRV
IAHPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQHVDVREEGKE
NAFSLGHTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFHECNGGDRKKMEELLVR
TKKEKPTFIPYYISACRDLPGKFLLGYQPRGKPRIEYVTITPDGFRYRSQIFPTVNGLFR
WFKDHYQDPVPGVTPASSRTRTPASVNATPANINIADLTRAVNSLPRNMTSQMFNAIAAV
TGQGQNPNTTPAQWASSQYGYSGGSSAGGGGGSSSAYHVFATPQQPMATPLMTPSYSYTT
PGQQQAMTTPQYPSSTPQSSHGHHQHSSSTPSSSSSRVRTPQPKASSHTAVDWGKMAEQW
LQEKEAERRKQKTPRMTPRPSPSPMIESTPMSIAGDATPLLDEMDR
NT seq 5181 nt   +upstreamnt  +downstreamnt
atgtctgacttcatcgagagcgaggctgaggagtcggaggaggagtttgaggagaaggac
ctaaagcccaagaagacccagagatttatggaagaagatgaagaggaagaagaagagaat
actgaagatcaagacgagcacggaaacctgagagggcttattgatgatgatgacgtggag
gaagaagaggaggaggaacggggggaaccaccagcaggagaggacagtgactctggggaa
gaggtccgtcatcgacgcaggaaacggagttttgatgactatttggatgatgatgatctg
gacctcattgaggagaatttaggagtaaaagtgaagaggaggaaaaagaagtactctcgt
gtgaaaacaatggatgatgagggagatgatgatgatgaaaaagacctgattgctgatgag
atcttcactggggatggcgacggagaaggagaggtggaggatggagaggccgtagataca
cttcacccaagagatgatgaagaggaggaagatgatgaggaatctgatattgatgatttt
attgtggatgatgatggacaacccatcactaaaaagaagggaaagaagttctctggctac
actgatgctgctttgcaagaagctcaggagattttcgggggtgactttgactttgctgag
tttgacactgaagcttatgatcatgcagaagaagaagaagaggatcaggatgatgagtcc
tgggatcggcccaagaagcagaccaagagaagagtcagccgccgtagcatctttgagatc
tatgagcccagtgagctggagagcagccacatgaccgatcaggacaacgagatccgctct
acagacatgccagaaagattccagttaagggccatccctgtaaagcctgctgaggatgat
gagctggaggaagaagctgaatggatttacagaaatgctttctccacaccgacaatctcc
atgcaggaaagcacagattacctggatcgtggaacaacaactaatttcagcagaaagggc
ccaagtactattgctaaaatcaaagaagccctgaattttatgaggaaccaacactttgag
gttcccttcattgcgttctacaggaaagagtatgtggaaccagagctgaacatcaatgat
ctctggaaggtgtggcagtgggatgagaagtggacccagctgaagaccagaaagcagaac
ttgacacgtcttttccagagaatgcagtcttatcagtttgagcagatctcggctgaccct
gacaagcctttagctgactctactcgtcccctagacactgctgacatggagagactgaaa
gacgttcagtctattgatgagctgggtgatgtctacaatcacttcctgctctactatggc
agagacattcctaagatgcagaatgcagcaaagggtggcaaaaagaaactaaagaagatc
aaggaagtttcagaggaagatggggaagaagcagaagtggaggaggaagaggaagaagag
gagcaaaagggtccagatctgaaacaagcctcacgcagagatatgtacagcatctgccag
agtgcaggccttgatggtcttgccaagaagtttggtctgaccccagaacagtttggtgaa
aacttgcgagacagttatcagaggcatgaaaccgagcagtttcctgcagagcctttggag
ctggccaaggactatgtttgcagccaatttaacaccccagaggctgtcctggaaggcgct
cgctacatggtggccatgcagattgcccgcgagcctctggtcagacacgtgctcagacaa
accttccaggagagggccaagattaacatcaagccaactaagaagggcaagaaggatgtg
gatgaggcgcactttgcctattctttcaagtacttgaagaacaagcctgtgaaagagctc
agtggagatcagttcttgaagatgtgtctggctgaggaggaaggccttctcgccatagac
atctgcattgaccttgttggagtcaaagggtatggagatcagacttactttgatgagatc
aagcagttctactacagggatgagttcagtcaccaggtgcaggagtggaacaagcagaga
actctcgccattgaaagatccctgcagcagttcctgtatccacagatggccaaagaatta
aagaacaagcttatcgctgaagcaaaggacaatattgttaagtcctgctgcaagaagctg
tataattggttgaaggtggctccttatcggcctgatcaacaggtggaggaggacgatgac
cttatggatgagtcacaaggaaagggcatccgtgtgctcggagtggcctttgcttctggc
agagacacaccagtgttctgctctctcattaatggtgaaggagaggtggtggatttcctt
agacttccttatttcctgaagaggagaaatgcatggagagaagatgaacgagagaaaaag
caacaagatgttgaaaacctcaaaaaattcctcctcagtaagaagccacatgttgttgct
gtttctggggagaatcgtgatgcgcatatggtgatggaggacatcaagcgcaccatcagt
gagctagagcagaactcctctctgcctgtggtgggagtggagttggtggacaatgaactt
gctgtgctttatatgaacagcaagaagtctgaggcggatttcagggattacccacctctg
cttcggcaggctgtgtctgtggctcgcaaaatccaggacccactagtggagtttgcccaa
gtctgcagtactgatgatgacatcctgtgtttaaaactgcatcccctgcaggagcatgta
gtgaaagaggaactgctgagcgcgctctactgtgagttcataaaccgagtgaatgaggtt
ggtgtggatgtgaaccgagccatcgctcacccttatacccagagcctggtccagtacatc
tgtggtctcggaccaagaaaaggctcacacttgcttaagattcttaagcagaacaacact
aggttagagaaccgaacccagttggtcaccatgtgccatatggggcccaaagtcttcatt
aactgtgctggatttatcaagattgacacagcctctcttggagacagcactgactcctac
attgaagttctggacggctctcgagttcaccctgaaacatacgagtgggcacgtaaaatg
gcggtggatgctctagagtatgatgaatctgcagaagatgccaacccagctggagcacta
gaggagattcttgagaatccggagaggttaaaagatctggatctggatgccttcgctgag
gagctggagagacagggttatggtaataagggaattacactgtatgacatccgagcagag
ctcagctgtagatataaagacctgagagctccatacagacctcccaacacagaggaagtc
tttaacatgctcaccaaggagacacctgagactttctatattggtaaactgatcacctgt
gtagtaactaacatcgcacacagacgaccacaaggtgagagttatgaccaggccatccgt
aatgatgagactggactctggcagtgtcctttttgccagcaggacaacttccctgagctc
agtgaggtgtggaatcactttgacagcggctcctgtcctggtcaagccatcggagtaaga
accaggttagataacgccgtcatgggcttcattccaactaagtttcttagtgacaaagtg
gtcaagcaccccgaggagagggtcaagcctggcatgaccgtgcactgccgcataatgaag
atcgacattgagaagttcaatgtagatctcacttgcagaacgtctgatctgagcgataag
aacaacgaatggaaacttcccaaagacacctattatgactttgatgctgagacagatgat
gttaaacaggaagaggagcagaagaagaaacagcagagaaccacttacatcaagcgtgtg
attgcgcatccatccttccacaacatcaacttcaaacaagcagagaagatgatggagtcc
atggaccagggtgatgtggtgattcgaccgagcagtaaaggggagaaccatttgacggtg
acgtggaaggtggcagatgggatctatcagcatgtggacgtccgtgaagagggcaaagaa
aacgccttcagccttggacatacactctggattaacactgaggagtttgaggatctggat
gaaatcacagccagatatgtccagcccatggctgcattcgcacgagatctgctcggccac
aagtacttccatgagtgcaatgggggcgacaggaagaaaatggaggagcttctagtaagg
acaaagaaagaaaagccgacgttcatcccttactacatctcagcatgtagagacctgcct
ggcaaattcttgctgggttaccagcctagagggaagccgaggatagaatatgtaaccatc
actccagatggctttaggtatcgctcgcagatattccctacggtcaatggcctcttccgc
tggttcaaagatcactaccaggatcctgtgccaggtgtgacgccagccagcagcagaacg
cgaacgccagcatcagtaaacgccacacctgccaacatcaacattgcagacttgactcga
gctgtgaactctcttccacgtaacatgacgtcccaaatgttcaacgccattgcagcggtt
acagggcagggccaaaaccccaacaccacaccggctcagtgggcctccagccagtatggc
tacagcggcggcagcagtgcaggaggaggaggaggcagcagcagtgcttatcatgtgttc
gcaacaccccagcagccaatggcgacacccttgatgacgcccagctactcttacaccaca
ccaggccagcagcaggccatgaccacaccacagtatcccagcagcacaccacagtcctca
catggacaccatcagcattcatcttccactccatcatcatcttcatcgagagtgaggacg
ccacagcccaaggcgagctctcacaccgccgtggattggggtaagatggctgaacagtgg
ctacaggagaaagaagcggaacgacggaagcaaaagaccccccgcatgactccccgaccg
tcccccagccccatgatcgagagcacacccatgtccatagctggagatgccactccattg
ctagacgagatggaccgatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (48)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (12)   
   Pfam (12)   
All databases (76)   

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