KEGG   Danio rerio (zebrafish): 368893
Entry
368893            CDS       T01004                                 
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
  KO
K12875  apoptotic chromatin condensation inducer in the nucleus
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03013  Nucleocytoplasmic transport
dre03015  mRNA surveillance pathway
dre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    368893 (acin1a)
  09122 Translation
   03013 Nucleocytoplasmic transport
    368893 (acin1a)
   03015 mRNA surveillance pathway
    368893 (acin1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    368893 (acin1a)
   03041 Spliceosome [BR:dre03041]
    368893 (acin1a)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     368893 (acin1a)
Spliceosome [BR:dre03041]
 Complex C
  Other components
   EJC/TREX
    368893 (acin1a)
SSDB
Motif
Pfam: RSB_motif
Other DBs
NCBI-GeneID: 368893
NCBI-ProteinID: XP_005171332
ZFIN: ZDB-GENE-030616-583
Ensembl: ENSDARG00000054290
UniProt: A0A8M2BIJ9
Position
2:complement(38197815..38225469)
AA seq 1929 aa
MRKALRSAQATERVKGIKMADLEDVTLDGRPLHSLRVADLKAALEERGLPKSGQKNALVK
RLKGALMLENLQKTSTPHIGLQPNSRIGEEMSQNSFIKQYLAKQQELLRQRLEKEAREAA
ETDGTDRGDHTESNDNIHAASNQDVASSLVDQNQGSAAVAGGFGVTESESEKEMPGQPSL
STAAHSRPRASSVRLRGKGEPTSSHVPAESDDDSEAGDDEEEEEWNARPQRSRRAQPPKS
QPVRTRSSGSQQQQQPPPQHIPLLSQQLRHPTPPPSPPPELSFPLPDTPKQSPPSPGESP
SRQRISSSSSSGSSSSDSRSSSPEPASDTTERRPGPLTLLARKMASERACSGAGKRDREG
VDLQRSHQEGVVSAITHTANAASVLSHPSSVISNQGVSVVRAAVMEASDGIKQDEGVLWE
QEQERLKALEKEEEEREKALEKERAQALERKRLEAASKREKERALQREREEKERLEREQA
LERERALEQERLERERQEKERVEKERQEKEQALERERLKQERLEKERQEREEALERERLE
RERLEKERQEREEALEKERLERERLEKERREKEAALERERLEKERLEKEKKEKEAALERE
RLEKERIEKEKREKEEALERERLEKERLEKEKREKEEAQERERLKKERLEKEKKEALEKE
RLEKERQEKEAVERERLEKERLEKEKREKEAALERERLEKERIEKEKREKEEALERERLE
KERLEKEKREKEEALERERLEKERLEKERQEKEVLERERLEKERLEKERKEQEEALERER
LEKEKLEKEKQEQALERERLEKERLEKERKEQEKALERERLEKEKLEKEKQEQALERERL
EKERLEKERKEQETLEREKLEKLEKEKQEREQALERERLEKEHIEKEKREKEALERERLE
KERLEKERNEREQAIERERQEKEEREREETLEKERKEQERLEKERALEKEREAALELKKQ
EQERLEKEKALEEERLQKEQALQHEREAERKKEEERKQALEKQKEEQERALKEEKREKLL
KQKSVEEEKGKALKHEKEEEKESHLHPRKCGRDSGEFSHPVVHPGSPKSSPKKSDESEPG
ENPSISKDVQSSEPVPQQSPTLATPLSHQSSSKKSRFLRDAPVMAPLPSSVGSVLKRPRT
FSDSPQPRAPSIPTDSKSKEPVQEDAAQAPQTSVLTSGPHDLERKTPEVAVKQSVPQENI
QTSEDSEASKDTKHKTLTGVEDVKKSSTPEEEKKRGRAREKKVEKKERKSSSSSNTSSSD
SDSGSSSSRSSSSSSSSSSSSSSEEEKSCSASGGRRSEEVKRDSSSQPTEKVCQTVAEKP
PAPQRKKRVFTEKEEKDVNNEVIQNKKPCLDLQDGKETKEDIEEDADTNKDTTRSEVKEA
VMSEPEKVSESGEESTMAKTFSARRISISSSKASPGVGSSEGEAETASSAGAGRKRRWGS
STAVTAKKPSISITTDSLKSLIPDIKPSVGQEAVLDLHPEEMHLSGEEEGGERSDHDLKI
RRTVTQIVPSETQENGQKESKRSDHEDEEETTEERDRISPEEKTEGSLQVSMETEPSSPG
RDVDMKTVSPSDTRIRRSISQQKSGVSITIDDPVRTAKQPSPPRGKLSNIVHVCNLVRPF
TLGQLKELLNRTGTVVEESFWIDKIKSHCYVTYSSAEEAMATRTALHGVKWPQSNPKFLS
VDFCTQDELDFHRGLGPAGEKPPEDARGAAAAGPGRPMPVPLLPERDQWAEREREMERRE
RARAEREWDRDKVRDFSKPGEDREPGARRSRSRDRERRRKERGKSKERKADKKEKGPEEP
PAKLLDDLFRKTKAAPCIYWLPLTEEQAAQRAAARAERMREREKRIKEMEEEEGKKREEE
RRERMKPSGTAGGEGERGRDRERERDRGREREREGDKRKEGYRRPGVNSASGSRRSRSRS
DPPPRDRRR
NT seq 5790 nt   +upstreamnt  +downstreamnt
atgaggaaggcgttgcggtccgcgcaagctacagaacgagtgaagggaatcaagatggcg
gacctcgaagatgttacgctggacgggaggccgctgcattcgctccgggtagcggacttg
aaggctgcattggaagagcgagggcttccgaagagcggacagaaaaatgccctcgtcaag
agactcaaaggggctctcatgctggagaaccttcagaaaacctccactccacacattggc
ctgcagcccaactcccggatcggggaggaaatgagtcagaatagcttcattaagcagtac
ctggccaaacagcaagagcttctgagacagcgtttggaaaaagaggcacgagaggcagct
gaaactgatggaaccgaccgtggcgaccacacagagtccaatgataatatccatgctgcc
tcgaaccaggatgttgcttcttccttagtcgatcagaaccagggaagtgcagcagttgct
gggggatttggggtcacagaaagcgaaagtgaaaaagaaatgcctggacaaccgtccctt
tctacagctgcccattcccgtccaagagcttcatctgtgcggcttcgtggtaaaggagag
ccgacttcaagtcatgtaccagcagaaagtgatgatgacagtgaagctggggatgatgag
gaggaggaggagtggaacgccagacctcaacggagtcgtcgagcacagccgccaaaaagt
caaccggtgaggacaagatccagtggctcgcagcaacagcagcagccacccccccaacac
atacctttactgtcacagcagctcagacatccaactcctcccccatcccctcctcctgaa
ctttctttcccactcccagacacccctaaacagagtcctcctagtcctggagagtccccg
tctaggcagcgtatatctagctcttcgagttctggtagttccagtagtgacagtcgtagc
agtagtcctgaaccagcaagtgacaccacagaacgcagaccaggtccgttaaccttactg
gcacgcaagatggcatctgagagggcttgttctggagcaggaaagcgtgatagggaagga
gtggatttacaaagaagccaccaagagggagttgtatccgcaattacacacacagccaat
gcagcatcagttctctcacaccctagttcagtcatctccaaccaaggtgttagtgtcgtt
agagccgctgtgatggaagcgagcgatggcataaagcaggatgaaggtgttttatgggag
caagaacaagagaggctgaaagccctagagaaagaggaggaggaaagggagaaggcattg
gaaaaggagcgagcacaagctttggaacggaaaagacttgaagctgcttcgaaacgtgag
aaggagagggctttacagcgagaaagggaagagaaggagagactggagagggaacaagct
ttagaaagagagagagcattagagcaagaacgactcgaacgagagaggcaagaaaaagag
agggtggagaaggaaagacaagaaaaagagcaagctttagagagggagagactcaagcag
gaaagacttgagaaagaaagacaagaacgagaagaagctctagagagggagagattagaa
agagaacggcttgaaaaggaaagacaagaacgagaagaagctctagaaaaggagagattg
gagagagagcggcttgagaaggaaagaagagaaaaagaagctgctctagagagggagaga
ttggagaaagagcgtcttgagaaggaaaaaaaagaaaaagaagctgctctagaaagggag
agattggaaaaagagcgtattgagaaggaaaaaagagaaaaagaagaagctctagagagg
gagagattggagaaagagcgtcttgagaaggaaaaaagagaaaaagaggaagctcaagag
agggagagattgaagaaagagcgtcttgagaaagaaaaaaaagaagctcttgagaaagag
cgccttgagaaggaaagacaagaaaaagaagctgtagagagggagagattggagaaagag
cgtcttgagaaggaaaaaagagaaaaagaagctgctctagaaagggagagattggaaaaa
gagcgtattgagaaggaaaaaagagaaaaagaagaagctctagagagggagagattggag
aaagagcgtctggagaaggaaaaaagagaaaaagaagaagctctagagagggagagattg
gagaaagagcgtcttgagaaggaaagacaagaaaaagaagttctagaaagggagagattg
gagaaggagcgccttgagaaggaaagaaaagaacaagaagaagctctagagagggagaga
ttggaaaaagagaagcttgagaaggaaaaacaagaacaagctctagaaagggaaagactg
gagaaagagcgtcttgagaaagaaagaaaagaacaagaaaaagctctagagcgagagaga
ttggaaaaggaaaagcttgagaaggaaaaacaagaacaagctctagaaagggaaagactg
gagaaagagcgtctcgaaaaggaaagaaaagagcaagaaactctagagagagagaaattg
gaaaagcttgagaaggaaaaacaagaacgagaacaagccctagagagggaaagattggag
aaagagcatattgaaaaggaaaaaagagaaaaagaagctctagaaagggagagattggag
aaagagcgtcttgagaaggaaagaaatgaacgagaacaagccatagaaagagaaaggcag
gagaaagaagagcgagaaagagaggaaactttagaaaaggagcgaaaagaacaggaaagg
ctggagaaagagagggctttagaaaaagaaagagaagctgctctggaacttaaaaaacag
gagcaagaaagacttgagaaggaaaaagctttggaagaagaacgcctgcagaaagaacaa
gctcttcagcatgagagagaggcagagaggaaaaaagaggaggagcgaaagcaagcattg
gaaaaacagaaagaggagcaggagagagctttaaaagaggagaaaagggaaaaacttttg
aagcaaaaaagtgtggaagaggaaaaaggaaaggcattgaaacatgaaaaagaggaggaa
aaagaaagccatcttcatccacggaagtgtggccgtgatagtggtgagttttcccatcca
gtggtccatcctggttctcccaagagttcacctaagaagtcagatgagagtgagcctgga
gaaaatccaagcatcagcaaagatgttcagtcatcagagcctgtcccacaacagtcaccc
acacttgcaacaccactgtcccatcaatcttcctccaagaagtctcgtttccttagagat
gctcctgtgatggctcctctcccgtcttctgtgggttctgtgctaaagagacctcgcact
ttttcagacagcccgcagccacgtgccccctcaattccaacagattctaaatctaaagaa
ccagtgcaagaagatgctgctcaggcacctcaaacatcagtcttgacttcaggaccccat
gaccttgaaagaaagactcctgaggtggctgtcaaacaaagtgtaccacaagaaaatatt
cagacgtcagaggacagcgaagcaagcaaagacactaaacataaaacgctcacaggagtt
gaggatgtgaagaaatcttcaacgccagaagaagagaagaaaagaggacgggcaagggaa
aagaaggttgagaaaaaagaaagaaagtcatcatcctccagtaatacctcctcatctgac
tcggattctggatcctcatcctcacgctcctccagttcttcgtcatcatcatcatcatca
tcttcatcagaggaggaaaaaagctgttccgcatcaggtggtaggaggtctgaagaggtc
aaaagggattcttcatctcagccaacagaaaaagtttgtcaaactgtggctgaaaagcct
cctgcacctcagcgcaaaaaacgagtctttacagagaaagaggagaaagatgtgaacaac
gaagtcatccaaaacaagaaaccttgtcttgacctacaggatggaaaggagacaaaggag
gatattgaggaagatgctgacactaacaaagacactaccagaagtgaggtgaaggaggct
gtcatgtcagagcctgagaaggtttcagaaagtggcgaggagagcaccatggcaaagacc
ttctcagccagaaggatttccattagcagcagcaaagcgtctcctggggtggggagttca
gagggggaagcagagaccgcaagcagtgctggtgctggcaggaagaggagatggggctcc
agtacagctgtcactgccaagaaaccctccatcagcatcaccacagactctttgaagtct
ttaataccagacatcaagcctagcgtgggccaggaggcagttttagacctgcatccagag
gagatgcatctttctggggaagaggaaggtggagaaagaagtgaccacgacctgaaaatc
aggcgaactgtaacacagattgtaccctcagaaactcaagaaaatggacagaaagaatcc
aaaagaagtgatcatgaggatgaggaagaaacaactgaagagcgagaccgaattagcccg
gaggaaaaaactgaaggctcacttcaggtttccatggagacagagccatcttcccctggg
cgagatgttgatatgaagacagtctctcccagtgacactcgtattcgccgttccattagc
cagcagaagtcaggtgtgagcatcacaattgatgatcctgtccgcacagccaaacagccc
tctcctcctcgtggcaagctgtctaatatcgtccatgtctgcaacctggtgaggccattc
accctgggtcagttaaaggagctgttgaaccgcacaggaactgtagtggaggaaagtttc
tggattgacaagattaaatctcactgttatgtcacatactctagtgcagaagaggctatg
gccacgcgtacagcactgcatggtgtaaaatggccccagagtaaccctaaattcctcagt
gttgacttctgtacgcaagatgagttggacttccacaggggtttgggtccagcaggagaa
aagccaccagaggatgcccgtggggctgcagctgctgggcctggccgtcctatgccagtg
ccgctcctgccagagcgtgaccagtgggcagaacgtgaacgggaaatggaaaggcgagag
agagcacgtgcagaaagagagtgggacagagataaggtcagagacttcagcaaacctgga
gaggaccgggaacctggagccagaagatcacgctcacgagatcgtgaaaggcggcgtaaa
gaaagggggaagagcaaagagaggaaagctgataaaaaggaaaaagggcccgaggagcca
cctgctaaacttctggatgacctcttccgtaaaaccaaagctgctccgtgtatatactgg
ctccccctcactgaggagcaggcagcacagagggcagcggctcgtgcagagcgcatgaga
gaacgagagaagaggataaaggagatggaagaggaggagggtaagaaacgtgaggaggaa
cggcgggagaggatgaaacccagcggaactgctggaggagaaggtgagaggggccgagac
agagaacgagagcgagacaggggtcgagaaagagagcgcgagggggacaagcggaaagag
ggataccgtaggcctggggtaaacagtgcgagcggcagcagaaggtcacggagccgcagt
gaccctccacccagagatcgacggcgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (796)   
   KEGG ORTHOLOGY (1)   
   RefGene (790)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (11)   
   UniProt (1)   
   RefSeq(pep) (10)   
DNA sequence (117)   
   RefSeq(nuc) (11)   
   GenBank (53)   
   EMBL (53)   
Protein domain (1)   
   Pfam (1)   
All databases (932)   

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