KEGG D.rerio: 394119

Danio rerio (zebrafish): 394119

Entry

394119 CDS D.rerio

Gene name rad54l

Definition RAD54-like (S. cerevisiae)

Orthology K10875 DNA repair and recombination protein RAD54 and RAD54-like
protein [EC:3.6.1.-]

Pathway dre03440 Homologous recombination

Class Genetic Information Processing; Replication and Repair; Homologous
recombination [PATH:dre03440]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: SNF2_N Helicase_C HDA2-3 DEAD Rad54_N ResIII
PROSITE: HELICASE_ATP_BIND_1 HELICASE_CTER

Other DBs NCBI-GI: 41055574
NCBI-GeneID: 394119
ZFIN: ZDB-GENE-040426-968
Ensembl: ENSDARG00000018623
UniProt: Q7ZV09

Structure

PDB: 1Z3I

Position 6

AA seq 738 aa
MRRSLAPSQVAKRKQGPDSDDEEDWEPDMEPQSKRDCREKYISPYRKPLTPLTNRPVCAD
GNEHEAFIRKILSKPFKIPIPNYTGVLGLRALGLRRAGVRKALHDPFEDGALVLYEPPAI
SAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMG
LGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGG
SKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDN
QTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRD
ADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKL
FLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYS
TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGT
MSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR
VWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFS
LNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDA
AVSFVFHQRSHEDQRGVV

NT seq 2217 nt +upstreamnt +downstreamnt
atgaggagaagtctagcgccaagtcaggtggccaaaagaaaacaggggccagattcagac
gatgaggaggactgggagcctgacatggaaccacagagcaagagagactgtcgagaaaag
tacatctccccttacagaaaacccctgaccccgctgaccaacagacccgtctgtgctgat
ggcaatgagcatgaagccttcattcgcaagatcttatccaaaccatttaaaattcctatt
ccaaattacacaggcgttttgggtttgcgggctcttggtctgagacgagctggtgtgagg
aaagctctgcacgacccgtttgaagacggagctctggttctgtatgagcctccggccatc
agcgctcatgacctgatcaaagcagacaaggagaagctgccagtgcatgtggttgtagat
cccgtgctcagtaaagtgcttcgaccacatcagcgagagggtgtgaagttcttgtgggat
tgtgtgacgggacgacggattgagaactcctacggctgtattatggcggatgagatgggt
ctgggaaaaacattacaatgcatcactctcatctggactttactgaagcagagtccagac
tgcaaacctgagatcgataaggtcatcgtggtctctccgtccagcctggtgagaaactgg
tacaatgaagtgggcaagtggctcggtggacgcgtgcagcctgtggccattgacggaggc
tccaaagacgagatcgacagcaaacttgtaaacttcatctctcagcaaggcatgagaata
ccaactccaattctgatcatttcctatgaaaccttccgtctccacgctgaagtcctgcac
aaaggcaaagtcggactggtcatctgtgatgagggtcaccggctgaaaaactcagacaat
cagacatacctggctctgaactccatgaatgcccagaggagagtgctgatatctggaact
cccattcagaacgacctgctggagtatttcagcttggtgcactttgtaaactctggcatc
ctcggcacagctcaggagtttaagaaacgcttcgagattcctatcctgaagggtcgtgat
gcagacgccagtgataaagacagagctgccggagagcagaaactccaggagctcatcagc
attgtcaacaggtgtttgattcgaaggacttcagatattctttccaagtatctgccagtg
aagattgaacaagtagtctgctgcaatctgactcctctgcagaaagagctgtacaagtta
tttctgaagcaggccaaacctgtggagagtctgcagacggggaagatctccgtgtcttct
ctgtcctccatcacctcgctaaagaagctctgcaaccatcctgccctgatctatgagaag
tgtctgacaggagaagagggatttgacggagcactggatctcttcccacagaattattca
accaaagccgtcgaaccacagctctcagggaagatgctggtgttggattatatcttggcg
atgaccagaacaacaaccagtgataaagtggttctggtctccaactacacacagactttg
gatctgtttgaaaaactgtgtcgaaaccgaagatacctttatgttaggctggatgggacg
atgtccatcaagaagagagccaagattgtggagagattcaacaacccctctagcccagag
ttcatcttcatgctgagcagtaaagctggcggctgtggcctcaatctgattggtgcaaac
cgattggtgatgttcgacccggactggaatccagccaatgacgagcaggcgatggctaga
gtgtggagagacggacagaagaagacctgctacatctacagactgctgtcgacgggaacc
atagaggagaagatcctccagagacaggctcataagaaggccttgagcagctgtgtagtg
gatgaggagcaggacgtggagagacatttctctctcggagagcttcgggaactcttctcg
ctcaatgagaaaaccctcagcgacacgcatgacaggtttcgctgcaggcggtgtgtgaat
ggccgacaggttcgtcctcctcctgatgattcggactgtacctgtgatctctccaactgg
catcactgcgctgataagcgaggcctgagagacccggtgctgcaggcttcatgggatgca
gcagtctctttcgtcttccaccagcgctcacacgaggaccagagaggagttgtctga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UNIGENE (1)   
   ENSEMBL-DRE (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (1)   
   IPI (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (8)   
   Pfam (6)   
   PROSITE (2)   
All databases (22)

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