KEGG   Danio rerio (zebrafish): 553353Help
Entry
553353            CDS       T01004                                 

Gene name
capn1, im:7154842
Definition
(RefSeq) si:ch211-202f3.3
  KO
K01367  
calpain-1 [EC:3.4.22.52]
Organism
dre  Danio rerio (zebrafish)
Pathway
Protein processing in endoplasmic reticulum
Apoptosis
Brite
KEGG Orthology (KO) [BR:dre00001]
 Genetic Information Processing
  Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    553353 (capn1)
 Cellular Processes
  Cell growth and death
   04210 Apoptosis
    553353 (capn1)
Enzymes [BR:dre01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.22  Cysteine endopeptidases
    3.4.22.52  calpain-1
     553353 (capn1)
Peptidases [BR:dre01002]
 Cysteine Peptidases
  Family C2: calpain family
   553353 (capn1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
NCBI-GeneID: 
ZFIN: 
Ensembl: 
Vega: 
Position
17
AA seq 700 aa AA seqDB search
MPPPVVPHGMCLKVMNDRNMKGGMGSDTNPLKFMDQDYNFLQDYCLKTRQRFVDEFFPPD
LRSIGEGLLKPEVMARVEWIRPTKLYPEAAEFVVDTVSRFDYAQGFIGNCWFLASVGALT
FQSKLLQKVVPDGQSLRHNYTGLFHFRFWRFGKWFDVVIDDKLPTINRQLIFVKSKTYNE
FWPALLEKAYAKVCGSYADMHTGRVSEALLDFTGGVHMHYDLKTAPTDLWEIMYRASQSE
VLMGCESPAGNEERLPNGIVLGHAYTVTKVYQVMSGRNPVQLVRLFNPWGDSEWNGDWSD
NSPLWNTVDDEDRKQLLVSDNGEFWMSMKDFLRTFDNMDICCNCPDFLEGKSACKWTSKS
HNGSWVPGSTAGGCMNHPDTFCTNPQFWLRINEMDKTCDQGQNNVLVSLIQKPDKRNRRL
AQHHGIGFCVFAVPPEMRSEGKFRSSFFNRKPVVTSGNFQDARQVMKFFRLEPGEYLIVP
STYLPNKNADFILSILCKNDIQIQKDTERTEKDFLVDLIGVSESGCTEKEDEESKTKFLF
RQYSDQYKVVDAEKLQQILHENLLRGRKNAEGFGLDSCRSMIAMSDFCVTGRLQGSEFVR
LWDRITTYRDIFYNMDSSKDGVLSLNELQNALEKTGLHLNEDILNLMVVRYGGASEQISL
EGFICLVMRLNCMASIFQKLCENGKISLDESEWIGLTMYS
NT seq 2103 nt NT seq  +upstreamnt  +downstreamnt
atgcctcctccagtggttcctcatggcatgtgcctgaaggttatgaatgaccgtaacatg
aagggcggcatgggctctgacacaaatccactgaagttcatggaccaagactacaacttc
ctgcaagactactgtctcaagacaaggcagagatttgttgatgagtttttcccaccagac
cttcgttccattggcgaagggctgctgaagcctgaggtcatggcccgagtggagtggatt
agaccaacgaaattatatccagaagctgctgaattcgttgtagatacggtgtccaggttt
gactatgcccaagggtttataggaaactgttggtttctggcctctgttggtgccttaaca
tttcaaagcaaattactgcaaaaggttgttccagatggacagtcactcagacacaattac
actggcttatttcacttcaggttctggcgctttggaaaatggttcgatgtagtgattgac
gacaagctgccaacaatcaatcgccagctgatctttgtcaaatctaaaacatataatgag
ttctggccagccttgctggagaaagcatatgccaaggtatgtggctcctatgctgacatg
cacaccggccgagtgtctgaggccctgctggacttcactggcggggttcatatgcactac
gatctgaaaacggctccgactgatctgtgggagataatgtaccgtgcttcccagtcagag
gtccttatgggctgtgaaagcccagcagggaatgaggagcggttaccaaatggcatagtt
ctgggccacgcttacactgtgacaaaggtctaccaggtcatgagtggtagaaatcctgtt
cagctggtgagattgttcaacccatggggagacagtgagtggaatggagactggagtgac
aattcacctttatggaacacggtcgatgatgaggaccgcaaacagcttctcgtatctgat
aatggagagttctggatgtcaatgaaagatttccttagaacatttgacaacatggacatc
tgttgtaactgtcctgattttctggaaggaaagtctgcatgcaagtggacctccaagtcc
cacaacggcagctgggttcctggaagtacagctggaggctgcatgaaccacccagacacc
ttctgcaccaacccccagttctggctgagaattaatgagatggacaagacgtgtgaccaa
ggccaaaacaatgttctggtgtccctcatacagaaacctgacaagaggaacagacgtctg
gctcaacaccacggaattggcttctgcgtgtttgcggttccaccagagatgagatctgag
ggaaagttcagatcaagcttttttaatagaaagcctgtggtgacaagtgggaactttcag
gacgcaagacaggtgatgaagttcttcaggctggaaccaggagagtatctcattgtaccg
tccacttacttgcctaataagaacgcagatttcattctgtccatcctctgcaagaatgac
atccagatacaaaaggacacagaaagaacagagaaagattttcttgtggatcttattgga
gtgtctgagtctggttgcacagaaaaggaggatgaagagtcaaaaacaaaatttctgttt
cgacagtattctgatcagtacaaagttgtggatgctgagaaactccagcagattcttcat
gaaaatctgcttagagggagaaaaaatgctgaaggatttgggctggattcctgtagaagt
atgattgccatgtcagatttttgtgtcactggaagacttcagggatcagaatttgttcgt
ctgtgggaccggattacaacctacagggacatcttctacaacatggactcttctaaagat
ggtgttctgtctttgaatgaacttcaaaatgcattagagaaaacaggcctacatctaaac
gaagacatcttgaatctcatggtggtgcggtacggtggtgcatctgaacagatctcgttg
gagggattcatatgccttgtcatgcgtttgaactgcatggccagcatatttcagaaactc
tgtgaaaatgggaagataagtcttgatgagagtgagtggataggactcaccatgtactca
tga

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