KEGG   Danio rerio (zebrafish): 553355
Entry
553355            CDS       T01004                                 
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04510  Focal adhesion
dre04512  ECM-receptor interaction
dre04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:dre00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    553355 (col4a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    553355 (col4a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    553355 (col4a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    553355 (col4a2)
   00536 Glycosaminoglycan binding proteins [BR:dre00536]
    553355 (col4a2)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   553355 (col4a2)
Glycosaminoglycan binding proteins [BR:dre00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   553355 (col4a2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 553355
NCBI-ProteinID: XP_017213247
ZFIN: ZDB-GENE-070725-3
Ensembl: ENSDARG00000104110
UniProt: A0A8M6Z838
Position
9:8730520..8885821
AA seq 1670 aa
MEGENHLQHWNTLRCFLLCLVVLILTTDVNAGVKKSTGPCGGRDCSGGCQCYPEKGARGL
PGPLGPQGPTGPKGRQGEPGLQGPKGMKGEHGEAGFVGPKGSVGMEGVPGFNGADGVPGH
PGPSGARGKAGPDGCNGTRGDSGMPGFPGLEGGQGTPGWPGMKGEKGDPLEVWVYMERFR
GDPGPAGFPGIVGPTGDPGYRGLPGFQGPWGPQGLKGAKGQKGERTKILKGVKGELGEIG
EPGPPGVFSQTSPIPSDWQGEKGKMGSKGDKGDLGYLSTKAESGVSGFAGARGNPGLDGW
PGPRGDTGLPGFPGNNGRKGDVGEPGELVGSPFDDTGVGPPGPPGERGPVGNYGRKGAKG
QPGPPGPPPYGQQTVELWGPEGPRGPKGASGETGEPGNPATQPGPPGPDGSPGSVGPPGP
KGSLEEYFKGSPGHRGRPGSAGKKGPKGDHGLCECSVKPPPGPPGPPGDSGDPGMAGEWG
QQGDQGDPGTKGANGLPGFPGTEGLPGPKGRKGELMEAVQKGSAGDPGDPGHSGFPGEQG
RPGIDGRDGEPGFRGPPGEGPVGEPGAKGYSGPPGRSGLIGPKGNPGQVLGATKGLSGLP
GDDGQTGPDGRTGPPGPPGDCSSRGGSQWSIPVECIGDPGPPGESGLPGPRGLEGFPGVP
GPKGTAGFSGDLGDKGERGEPGRGGPPGPKGFTGPRGDLGYPGTKGVKGPPGLSGKPGLD
GASGGKGEHGEVFGASSGAPGDPGLPGHRGDTGLTGDPGLPGYFGMEGMPGMTGLKGESG
PPGLQGEQGRPGPPGTFGFPGQTGYTGPPGPPGNIGEPGPSGRRGDQGEPGLIGARGVKG
AIGDPGNIGVTGNIGPPGDQGETGGPGFFGLPGLKGSKGGQGMTGFPGKTGERGLKGFSG
TKGEIGLPGHQGAKGAPGSPGQKGDRGLTGPPGDKPVIHITPHMKEVMKGSKGDHGNMGD
PGFTGPRGTKGFPGIPGGEGKDGHPGEPSVVKGVKGLPGEPGLEGPKGMPGPTGLPGIEG
FPGMSGPKGNKGSSGAYGRPGDSGIKGFKGDLGPTISLPGSTGLRGETGHPGSTGAKGLY
GMPGERGSSGLDGIEGMKGYQGEPGTVGPPGSDGLQGFPGSQGHKGRSGDPGQTGTTGIQ
GQPGQKGFPGLKGIFGLDGLKGQKGNQGVPGTDNWGQPGNPGTKGELGETGIPSTTTGVP
GSLGHKGTTGDSGNKGEIGQRGVPGPQGQQGFSDIKGTQGDYGFPGIKGIPGFPGTRGTP
GIPSPFGAKGDRGNVGDFGLFGEKGVQGDRGEKGSSGESGVSGRKGDKGEPGMMGFPGRR
GFQGDRGPFGPKGDTGPPGFPGLPGAKGYPPVPQKLPGEQGPPGQMGIQGPSGRNGNPGP
AGPPGDSGFVGPSGHKGMPGLPGIPGSPGFRGEPGSMGHSGLQGEQGTRGRPGMPGPLGM
AGRSVNVGYLLVKHSQSEEIPMCPQGMSLLWMGYSLLYFEGQEKAHNQDLGLAGSCLPRF
NTMPFLYCNPGDICYYASRNDKSYWLSTTQPIPMMPVEESEIKPYISRCSVCEAPSVAIA
VHSQDTTIPNCPVGWRSLWIGYSFLMHTAAGDEGGGQSLASPGSCLEDFRTTPFIECNGA
KGTCHYFANKHSFWLTSIDESFQSSPSSETLKAGQLLSRISRCQVCMKNL
NT seq 5013 nt   +upstreamnt  +downstreamnt
atggagggtgagaatcatctgcagcactggaacacattaaggtgttttctgttgtgtctt
gtagtccttatccttacgacagatgtcaacgcaggagtaaagaagagcactggaccatgt
ggaggaagagactgcagtggtgggtgtcagtgttaccctgagaagggcgcaaggggattg
cctggaccacttggcccccagggtcccacaggccctaaagggcgacagggagagcctggc
cttcagggccctaaaggaatgaagggagagcatggcgaagcaggcttcgtgggtccaaaa
ggaagtgtgggaatggaaggggttccagggtttaatggagctgatggtgtacctggccat
cctggaccatctggagctcgaggtaaagcaggacctgatggctgtaatggaacccgggga
gattcaggaatgccgggcttcccaggtttagaaggcggacaaggaacaccaggctggcca
ggaatgaagggggagaaaggtgatcctttggaggtttgggtctatatggaaagattcagg
ggagatccagggccagctggtttcccagggattgttggaccgactggtgacccaggatac
agaggattgccaggattccaaggtccttggggtcctcaaggtctgaaaggtgccaaggga
caaaagggtgaaagaactaaaatcttaaaaggagtcaaaggagaattgggagaaattgga
gagccaggcccaccaggagttttctcgcaaaccagcccaatcccttcagactggcagggt
gaaaaaggaaaaatgggttctaaaggagataagggagatttgggatatttatccacaaaa
gcagagagcggcgtgtcagggtttgcaggagctcggggaaacccaggattagatggctgg
ccaggacctaggggtgacactggactgccaggtttcccaggaaataatggccgcaaggga
gacgtaggagaacccggggagctagtaggaagtccatttgatgatactggagtgggtcct
ccaggacctccaggagagcgtggccctgttggaaattatggccgtaaaggtgctaaagga
caaccaggtcctccaggaccccctccctatggacaacaaacagtcgaattgtggggtcca
gaaggacctcgggggccaaagggagccagtggtgaaactggagaacctggtaatcctgcc
actcagcctgggccacctggtcctgatgggtcacctggaagtgttgggccacctggaccc
aagggatcattggaagagtacttcaaaggttctcctggacaccgtggacgtccagggagt
gcaggaaaaaaggggccaaagggtgaccatggtctgtgcgaatgcagtgtaaaaccccca
cctggtcccccgggacctcctggtgattctggggatcctgggatggcaggtgagtggggt
cagcagggtgatcagggagatccaggaaccaaaggtgccaatggtttgcctggttttcct
ggcacagaaggattacctgggcccaaaggcagaaaaggagagcttatggaagctgtgcag
aaaggatcagctggtgacccaggagacccaggtcacagtggtttccctggagaacaggga
agaccagggatagatggcagagatggtgaaccaggttttagagggcctcctggtgaaggt
cctgttggtgaacctggagcaaagggatactcaggtccaccaggtcgttcaggtctaatc
ggcccaaaaggaaatcctggccaagttctcggagcaactaaaggtttaagtggcttgcct
ggagatgatggacagactggtcctgatgggagaacagggcctcctggtcctccaggagac
tgtagctcaagaggaggaagtcagtggagtatcccagtggagtgtattggagatcctggg
ccacctggagagagtgggctacctggaccacgagggttggaaggatttccaggtgtacca
ggacctaaaggcacagcaggtttttctggagatctcggggataaaggagagcgaggtgaa
ccaggaagaggaggcccacctggaccaaagggttttactggacctcggggagatttagga
tatcctggcaccaaaggtgtgaaaggtcccccaggtttatctggtaaaccaggtttggat
ggagcttcagggggaaagggtgaacatggtgaagtatttggagcatcttctggtgcccct
ggagatccgggactgccaggacatagaggagacaccggcctgactggagacccaggctta
ccaggatactttggtatggagggtatgccaggtatgactggccttaaaggtgaaagtggc
cctccaggccttcaaggagagcaaggacgacctggaccaccaggaacatttggttttcct
gggcagactgggtacacaggacctcctggaccacctggaaatattggagaaccaggtcca
agtggaagaaggggagatcagggagagccaggactaataggagcaaggggagtaaagggt
gccattggagaccctggcaatattggtgtgacaggaaatatcgggcccccgggagatcaa
ggagaaacgggtggacctggtttttttggtctcccaggcttaaaaggttccaaaggtggt
cagggcatgaccggtttccctggaaagaccggtgagagaggtttgaaaggattttcagga
acgaaaggggagatcggtttaccaggacaccaaggtgcaaaaggagctcctggttctcca
ggtcaaaaaggtgaccgagggctgacggggcctccaggtgacaaaccagtcatacatata
accccacatatgaaagaggtcatgaagggatctaaaggtgaccatggaaatatgggagat
cctggcttcactggtcccagaggtacaaaaggctttccaggtataccaggtggtgaggga
aaagatggacatccaggtgagcccagtgttgtaaaaggtgtaaaaggtcttccgggagaa
ccgggtttagaagggcccaagggaatgccagggcctaccggactccctggaattgaaggt
ttccctggaatgtctggacccaagggcaacaaaggctcctctggtgcctatggacgacct
ggagattctggaatcaaaggattcaaaggtgacttggggcctaccatcagtcttccagga
tcaacaggactgagaggtgaaactggacatcctggaagtacaggtgcgaagggactctat
ggtatgcctggagaaagaggaagttcaggattagatggaattgaagggatgaaaggctac
caaggtgaacctgggacagttggaccaccaggctctgatggactacagggttttccagga
agccaaggtcacaagggcaggtcaggagacccaggacagacaggaaccactggaatccaa
ggccagccaggccaaaaaggatttcctggtcttaaaggcatttttgggttggatggactg
aaaggtcaaaagggtaaccagggtgtcccaggtactgacaactggggccaaccaggaaac
ccaggaactaaaggagagttaggagagactggcatccccagcacaacaactggtgtcccc
gggtcactgggacacaagggtaccactggagattcaggaaataagggtgaaattgggcag
cgaggtgtaccggggcctcaaggtcagcaaggattttctgatataaaaggaacgcagggc
gactatggttttccaggcataaaaggaataccaggttttcctggtaccagaggaacccca
gggatcccatctcccttcggagcaaaaggagatagaggaaatgttggtgatttcggatta
tttggagaaaaaggagtccagggtgacagaggagaaaagggaagttctggggaatctgga
gtgtcaggaagaaaaggtgataaaggagagccagggatgatgggatttccaggaagacgt
ggttttcaaggtgacaggggcccttttggacctaaaggagataccggacccccaggtttt
cctggattacctggggctaaaggatatccaccagttccacagaaacttccaggggagcaa
gggccgcctggtcagatgggtattcagggaccatcggggcgcaatggaaacccaggccct
gcgggacctcctggtgattcaggatttgtaggtccaagtggacacaaggggatgccaggt
cttcctggaataccaggaagtccaggcttccgtggagaacctggatcaatgggccactct
ggtctgcaaggcgaacaagggactcgaggacgacctggtatgcccggtcctcttggaatg
gctggccgcagtgtgaacgttggctatctgctggtgaagcacagtcagtctgaggagatc
cccatgtgtcctcagggcatgtccttgttatggatgggttacagtcttctgtacttcgag
ggccaggaaaaggcccacaaccaagacctgggtctagccggatcatgcctcccccgtttt
aacaccatgccctttctgtactgtaatccgggagacatatgctactacgccagccgcaat
gacaaatcctattggctgtccacaacccagccgattcccatgatgcccgtagaggagtct
gaaataaagccgtacatcagccgctgctctgtgtgtgaagctccatctgtggccatcgcc
gtacacagtcaagatacaaccattccaaactgcccagtcggctggagaagcctctggatt
ggctattccttcctcatgcacacagcagctggagatgaaggtggaggtcagtctctggcg
tctccaggctcgtgtcttgaggatttccgcaccacccccttcatcgagtgcaacggggcc
aagggaacgtgtcactacttcgccaacaagcacagcttctggctgacgtctatcgacgag
tctttccagagctccccttcctctgagacactcaaagccggtcagctcctgtcccgcatc
agccgctgccaagtgtgcatgaagaacctgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (66)   
   KEGG ORTHOLOGY (1)   
   RefGene (60)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (88)   

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