KEGG   Danio rerio (zebrafish): 558395
Entry
558395            CDS       T01004                                 
Symbol
xpo1a
Name
(RefSeq) exportin-1
  KO
K14290  exportin-1
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03008  Ribosome biogenesis in eukaryotes
dre03013  Nucleocytoplasmic transport
dre03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    558395 (xpo1a)
   03008 Ribosome biogenesis in eukaryotes
    558395 (xpo1a)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    558395 (xpo1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    558395 (xpo1a)
   03009 Ribosome biogenesis [BR:dre03009]
    558395 (xpo1a)
   03016 Transfer RNA biogenesis [BR:dre03016]
    558395 (xpo1a)
   03036 Chromosome and associated proteins [BR:dre03036]
    558395 (xpo1a)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     558395 (xpo1a)
Ribosome biogenesis [BR:dre03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    558395 (xpo1a)
  Pre-60S particles
    558395 (xpo1a)
Transfer RNA biogenesis [BR:dre03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    558395 (xpo1a)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     558395 (xpo1a)
SSDB
Motif
Pfam: CRM1_C Xpo1 CRM1_repeat_2 CRM1_repeat_3 CRM1_repeat IBN_N Sec7-like_HUS BspA_v
Other DBs
NCBI-GeneID: 558395
NCBI-ProteinID: XP_009292977
ZFIN: ZDB-GENE-050309-201
Ensembl: ENSDARG00000078041
UniProt: E7F0E8
Position
1:complement(53656235..53685132)
AA seq 1071 aa
MPADMTMLADHTARQLLDFSQKLDINLLDNVVNSMYYDVGSQQRLAQEVLTNLKDHPDAW
TRVDTILEFSQNMKTKYYALQILETVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDANSV
EKEQVYISKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMIILKLLSEEVFD
FSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY
IFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVSQYEEQFVNLFTLTMMQLKQMLPL
NTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLLVSEV
EETEIFKICLEYWNHLAAELYRESPFSTSTSPLLSTSQHFDVPPRRHLYLPVLSKVRLLM
VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIMTEKL
HNQVNGTEWSWRNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV
QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQERLIEKYMLL
PNQVWDSIIQQATKNVDILKDPETVRQLGSILKTNVRACKAVGHPFVLQLGRIYLDMLNV
YKCLSENISSAIQSNGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVGENFVPPL
LEAVLIDYQRNVPAAREPEVLSTMATIVNKLGSHITGEIPKIFDAVFECTLEMINKNFEE
FPEHRTHFFYLLQAVNSQCFPAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTM
LQNIAQEEAAAQSFYQTYFFDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISV
ALNAGTAGNNQGYVQDYVANLLKTAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLRDFLV
QIKEFAGEDSTDLFLEEREASLRQAQEEKHKIQLSVPGILNPHELPEEMCE
NT seq 3216 nt   +upstreamnt  +downstreamnt
atgccggcagacatgaccatgttggcagatcacacagcacgacagttgctggacttcagt
caaaagctcgacatcaatttactggacaatgtggtcaactccatgtactatgatgtggga
tctcagcaaagactggcacaagaagttctcaccaacctgaaggaccatccagatgcctgg
accagagtggacaccatattggagttctcgcagaacatgaagactaaatactacgctcta
cagatactagagacggtgattaaaacacgctggaagattcttccacgaaaccagtgtgaa
ggaattaagaagtatgttgttgggctgataatcaagacttcatctgatgccaacagcgtg
gagaaagagcaggtgtacatatcgaagctcaacatgatcctggtgcagatcctgaagcag
gagtggcccaaacactggcccacattcatcagtgatatagtgggagcgagtcgcaccagt
gagagtctgtgtcagaacaacatgataatcctgaagctgctcagtgaggaggtgtttgat
ttctccagtggtcagatgactcaggtcaaggccaaacacctgaaggacagtatgtgcaac
gaattttcccaaatattccagctatgccagtttgtaatggaaaattcccagaatgcccct
ctggttcatgccacattggagacactccttcgttttctcaactggattcccctgggctac
atatttgagaccaaactcatcagcacgctggtgtacaagtttctgaatgttccgatgttc
cggaacgtcactctgaagtgtctgactgagatcgcaggtgtcagtgtcagtcagtacgag
gagcagtttgtgaacctgttcacactcaccatgatgcagctcaaacagatgctcccgctg
aacacaaacatccgtctagcgtattcaaatggaaaagatgacgagcagaacttcatccag
aacctcagcctgttcctctgcaccttcctcaaagagcacgggcagctgatcgagaagaga
ctaaacctcagagagactcttatggaggccctgcactacatgctgctagtgtctgaggtg
gaggagacggagatcttcaagatctgtctggagtactggaaccatctggctgctgagctc
tatagagagagtcccttctccacatccacatctccactgctctcaaccagccaacacttt
gacgtgccgcctcgtagacacctgtacctacccgtgctctccaaggtgcgtttgctcatg
gtgagtcgcatggccaaaccagaggaggttttagtggtggagaacgatcagggcgaagtg
gtgagagagttcatgaaggacaccgactccatcaacctctacaagaacatgagggagact
ctggtctacttgactcatctggattatgctgatactgagcgtatcatgactgaaaagctt
cacaatcaggtgaatggcaccgaatggtcctggaggaacctgaacacgctgtgctgggcc
atcggctccattagcggagccatgcatgaggaggacgagaagagattcctcgtcacagtc
attaaggacctgcttggtctgtgtgaacagaaaagagggaaggacaacaaggccatcatc
gcctccaacatcatgtacatcgtcggccagtacccacgattcctcagggcccactggaag
ttcctcaagaccgttgttaacaaactctttgagttcatgcatgaaacccatgatggtgtg
caggacatggcatgtgacacgttcatcaagatcgctcaaaagtgcaggaggcattttgtg
caggtgcaggtgggagaggtgatgcctttcattgatgagatcctcaacaacatcaacacc
atcatatgtgacctgcagccgcagcaggtgcacacgttctatgaggccgtgggctacatg
attggcgcgcagacggaccaggccgtccaggagcgcctcattgagaaatatatgctgctc
cccaaccaggtctgggacagcatcatccagcaggccaccaagaatgtggacatcctgaag
gacccggagacagtgcgtcagctgggcagcatcctgaagaccaatgtgcgggcgtgtaaa
gctgtgggtcacccgttcgtcctgcagctgggccgcatttacctggacatgctgaacgtc
tacaagtgcctgagtgagaacatctcctccgccatccagagcaatggtgagatggtgact
aagcagcccctgatacgcagcatgcggacagtaaagagagagactctgaagctcatctca
ggatgggtcagccgctccaacgaccctcagatggttggcgagaactttgttccacctttg
cttgaggcggtcctcattgactaccaaaggaacgttccagctgctcgagaacccgaggtg
ctcagcactatggccaccatcgtcaacaagctcggctctcatatcacaggagagatcccc
aagatattcgatgcagtgtttgagtgcactctggaaatgatcaacaagaactttgaggag
tttcccgagcacagaacgcattttttctacctgctgcaagctgtcaactcccagtgtttc
ccagcattcctgtccatcccaccggcacagttcaaactggttctggactccatcatctgg
gccttcaaacacaccatgaggaacgtggccgacactggtcttcagatcctgttcaccatg
ctgcagaacatcgctcaggaagaggccgcagctcagagcttctatcagacatacttcttc
gacatcctgcagcacatcttctctgttgtcacggatacgtctcacacggccggtctgacg
atgcacgcctccatcctggcctacatgttcaacctagtggaggagggtaaaatcagcgtg
gcactgaacgcaggcacggcgggtaacaatcagggctacgtgcaggactatgtggccaac
ctgctgaagactgccttcccacatctgcaggatgcacaggtgaaggtgttcgtcactggt
ctgttcagcttaaatcaggacattcctgcctttaaagagcacctcagggacttccttgtg
cagatcaaggagtttgcaggcgaggactcaacagatctcttcctagaggagcgggaagcg
tctctccgtcaggctcaggaggagaaacacaaaatccagctctccgtcccaggaatcctg
aaccctcacgagctcccggaggaaatgtgtgaatga

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