KEGG T01004: 561901

Danio rerio (zebrafish): 561901

Entry

561901 CDS T01004

Gene name

thbs1, Tsp-1, si:dkey-11e23.1, wu:fc48c03

Definition

thrombospondin 1

Orthology

K16857

thrombospondin 1

Organism

dre Danio rerio (zebrafish)

Pathway

dre04115	p53 signaling pathway
dre04145	Phagosome
dre04350	TGF-beta signaling pathway
dre04510	Focal adhesion
dre04512	ECM-receptor interaction

Class

Environmental Information Processing; Signal transduction; TGF-beta signaling pathway [PATH:dre04350]
Environmental Information Processing; Signaling molecules and interaction; ECM-receptor interaction [PATH:dre04512]
Cellular Processes; Transport and catabolism; Phagosome [PATH:dre04145]
Cellular Processes; Cell growth and death; p53 signaling pathway [PATH:dre04115]
Cellular Processes; Cell communication; Focal adhesion [PATH:dre04510]

SSDB

Motif

Pfam:

TSP_C TSP_3 TSP_1 VWC EGF_3 EGF_CA cEGF EGF

Other DBs

NCBI-GI:

NCBI-GeneID:

ZFIN:

Ensembl:

Vega:

Position

AA seq 1170 aa
MKSTAIFLLLMLWNCESARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAEKGFLLLVNFKQFKRTRGSLLTVEKNDGSGPVFEIVS
NGKANTLDIVFSTENKQQVVSIEEADLAVGHWKNITLFVQEDRVQFYVGCEEVNVAELDA
SIHTILTQEIPGVAKMRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQNSMTDIIT
LDNPINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAAMFKELKGLGVVVQELSNELRKVT
DDKNMLMNQMGIRAGVCLHNGIVHKNKEEWTVDDCTECTCQNSATVCRKISCPLIPCANA
TVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQT
RDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQMDGKDCQGEGRQ
TERCEKSPCPINGGWGPWSPWDTCSVTCGGGVQNRKRLCNNPVPKHGGKECVGDAKVSQI
CNKQACPVDGCLSSPCFEGAQCTSFPDGSWKCGKCPTGYTGNGINCKDVNECKEVPDACF
EFNGVHRCENTVPGYNCLPCPTRYTGPQPFGRGVEDAAAKKQVCTPRNPCLDGSHDCNKN
ARCNYLGHFSDPMFRCECKPGFAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPN
LPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPLVFNPRQYDYDRDDVGDRCDNCPYN
SNPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYLYNVDQKDTDLDGVGDQCDNCPLEH
NPDQLDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDDN
DGIPDEKDNCRLVFNPDQLDSDGDGRGDACKDDFDMDNVLDIYDVCPENFDISETDFRKF
QMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTERDD
DYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRNAL
WHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRIYD
KTYAGGRLGLFVFSQEMVYFSDLKYECRDA

NT seq 3513 nt +upstreamnt +downstreamnt
atgaagtcaactgcaatctttttgctactgatgctttggaactgcgagagcgcgagagtc
gcagagagtcgagacgacaacagtgtttacgatctgttcgagctggtccaagtaccaagg
aaaaaccacggagtgaccctggtgaaaggcgacgacccgtacagccccgcctacaagatc
ctgaaccccgacctgatccccccggtccccgagagcgcctttagggacctaatcgattcc
attcacgccgagaaaggatttctgctgctggttaatttcaagcagttcaaacgcacgagg
ggaagcctgctgactgtggagaagaatgacggttctggacccgtgtttgaaatcgtttcc
aacgggaaagccaacactctggacattgttttttccaccgagaacaagcagcaggtcgtg
tccatcgaggaagcggacttggcggtgggacactggaaaaacatcactcttttcgtgcaa
gaggacagggttcagttctatgtgggatgtgaggaggtgaacgtggcggagctcgatgcc
tcaatccacaccatcctgactcaggagattccaggtgtggccaaaatgaggatcggtaaa
ggcgcggtgaaggacaggttcatgggggtgttgcaaaacgtgcgctttgtattcggaacc
acgctggaagccatcctgaggaataaagggtgccaaaactcaatgactgatatcattacc
cttgacaatcccataaatggatccagccctgcaatcaggacagattacactggccacaaa
acaaaagatctgcaaatgatttgtggcttttcatgtgaggatctggctgccatgtttaag
gaactgaaaggtcttggtgtggtggttcaagaactgtccaatgaactccgaaaagtgacg
gatgacaaaaacatgctcatgaatcaaatgggcattcgtgctggtgtatgtcttcacaat
ggaattgtgcacaaaaacaaggaggaatggacagtggacgactgcacagagtgcacttgc
cagaattctgcaacggtgtgccgcaagatttcatgtcccctaatcccatgtgcaaatgcc
acagtacctgatggagagtgctgccctcgctgtggaacaccgagcgactccgccgaggat
ggttggtccccctggtctgaatggacccattgttcagtgtcctgtggaaggggcattcag
cagcgcggccgttcctgcgaccgcatcaataacaactgtgagggcacgtcagtgcagacc
agagactgctacctccaggagtgcgacaagcgctttaagcaagacggtagctggagccac
tggtcaccctggtcatcgtgttcggtcacatgtggtgctggtgttattacacgcatccgt
ctctgtaactccccgacacctcaaatggatggcaaagactgccagggtgaagggcggcaa
actgagaggtgtgagaaatcaccatgtccgatcaacggtggctggggaccatggtcgccc
tgggatacttgctctgttacctgtggtggtggcgtccaaaaccgtaagcgtctttgcaat
aatcctgtacccaaacatggtggcaaagagtgtgtgggagatgcaaaggtcagccagatt
tgcaacaaacaagcctgtcctgttgatggatgtctttcgagtccgtgctttgaaggggcc
cagtgcacaagctttccagatgggtcctggaaatgtggaaaatgccccacaggatacact
ggcaatggaatcaactgcaaagatgtcaatgagtgtaaggaagtaccagatgcctgcttt
gaatttaatggagtccacagatgtgagaacacagtgccaggctacaactgtctcccttgc
cccactcgttacaccgggccacagccgtttggccgtggagtggaggacgccgctgctaag
aagcaggtgtgcactcctcgaaatccctgcctggatggaagccacgactgcaataaaaac
gctcgctgcaactacctgggccatttctctgaccccatgttccgctgtgaatgcaaacct
ggctttgctggaaatggacacatctgtggagaagatactgatcttgatggttggccgaat
gctgatctcgtgtgtgttgagaacgcaacctatcactgcaagaaggacaactgcccaaat
cttcccaactcagggcaagaagactatgacaaggatggcattggtgatgcatgtgacgat
gatgatgatgacgatggcattcctgatgacagggataactgcccactcgtcttcaacccg
agacagtacgactatgatcgggatgatgttggtgaccgttgtgataactgtccctacaac
agcaacccagaccagacagacactgacaacaatggagaaggagacgcctgtgctgtggac
attgatggagatggtattctgaacgagaaagacaactgtccgtatctgtacaacgtcgac
cagaaagacactgatcttgatggagttggagaccagtgtgacaactgtccattggaacac
aacccagatcagctggactctgattctgaccgcgttggagacaaatgtgacagtaaccag
gatatcgatgaagacggtcaccagaacaacctggacaactgtccatacatccccaatgcc
aaccaggctgatcatgacaaggacggtaaaggagatgcctgcgactacgatgatgataat
gatggcattcctgacgaaaaagacaactgcagactggtcttcaatccagatcagctagat
tctgatggcgatggacgtggcgatgcctgtaaagatgactttgacatggacaatgttctg
gatatctatgatgtctgtcctgagaacttcgatatcagtgaaaccgacttccgcaagttc
cagatggttcctctggatcccaagggcacttctcagatcgatcccaactgggtggttcgt
catcaaggaaaagagctggttcagacagtcaactgcgaccctggcattgctgttggtttt
gatgagttcaattcagtggacttcagtggaacattcttcatcaacactgagagggatgac
gactatgctggttttgttttcggataccagtccagctctcgcttctatgtggtcatgtgg
aagcagatcacacagacctactggtccagcacacctaccaaagcacagggttactcaggg
ctgtccatcaaagtggttaattccaccacaggacctggggagcatctgagaaacgccctt
tggcacactggagacacaccaggacaggtgcgcacattgtggcatgacccaaagaatgtg
ggatggaaggactttactgcttacagatggcacctgacacacagaccaagaactggacac
ataagagtggtcatgtatgaaggcaaaaagatcatggcagattctggcagaatctacgac
aaaacatacgcaggcggaagactaggtctcttcgtcttctcacaagagatggtgtatttc
tcagacctcaaatacgaatgcagagatgcgtaa

All links

Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (4)   
   ENSEMBL-DRE (1)   
   OC (1)   
   VEGA (1)   
   ZFIN (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (27)   
   RefSeq(nuc) (1)   
   GenBank (13)   
   EMBL (13)   
Protein domain (8)   
   Pfam (8)   
All databases (53)   

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