KEGG T01004: 563276

Danio rerio (zebrafish): 563276

Entry

563276 CDS T01004

Gene name

lig3, im:7139055, im:7145225, wu:fb12c02, wu:fd10b03, wu:fm79b09, zgc:112973

Definition

ligase III, DNA, ATP-dependent (EC:6.5.1.1)

Orthology

K10776

DNA ligase 3 [EC:6.5.1.1]

Organism

dre Danio rerio (zebrafish)

Pathway

dre03410

Base excision repair

Module

dre_M00296

BER complex

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:dre03410]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N zf-PARP DNA_ligase_A_C mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

ZFIN:

Ensembl:

Position

AA seq 1011 aa
MPSLWLGRALRTLSRSSLTKISWEPLFRATLKHQYLQCSRTLIFTRGSESSPSGVFFCAP
HTPAFTLISSSYFHISWPVRRSEQADMAEQRYCVEYAKRGTAGCKKCKDKIMKGLVRIGK
IVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITELEGWEELQDEDKDLINKHV
SELAAKVNSTPKKKVQAKLNTSGQLSSPPADPTVNAPRKFSGFTATKAGSSSSSPGPSPA
KPAQGSVLSAQMCDPTHKDNLLREFRKLCALVAEKSGYNAKTEIVRDFLTKGSGGDKFRG
DLYLTVKLLLPGVVKNVYNLNDKQIVKLFSRILNCNQDDMVQDLEQGDVSETVRMFFEES
KSFPPSAKSLLTIQEVDASLSRLSQLTKEDDQQAELQSIAKKCTGNDLKCYIRLVKHDLK
INSGAKHILDAVDPNAYDAFKASRNLGDVIDRVLRNQQDASNGTGPRKILSIEASLMTPV
QPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGNHFSYFSRSLKPVLPHKVAHF
KDFIPQAFAGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYFN
GVSLMDKPLCERRKFLHDNMVEVPNRILFSEMKHVTRAPDLAEMITRVIREGLEGLVLKD
IKGLYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPESR
KWCTVTKCSGGFDDAMLDRLQKDLDVIKIGKDPSKIPGWLKIVKNYYPDFIIRDPQKAPV
WEITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELYRISKENCDFEVT
AGPSKANQNDKSSSGGESGGSSPSASRGASTANKPKNGHTPKAKAAKTESSAPAVKRKLP
AEKQDVKKIKTESVHSNGQSKLKSVPTTDPKQEKTLLDIFTGVKLYLPESVKDFEKLRRY
FLAYDGDLVPEYDSALATHTLGQPEDGSSAQKVTSNWIWECIRKRRVVPPC

NT seq 3036 nt +upstreamnt +downstreamnt
atgcccagtctttggcttggcagggcattaagaacactcagcagatcatctttgaccaaa
atttcttgggagcctttatttagagcaacactcaaacaccaatatctccagtgctcgagg
actcttatatttacacggggctctgaatcaagccccagtggagtctttttctgtgcgcca
cacactccagcatttactttaatatccagctcttatttccacatttcctggcctgtgcgg
aggagtgaacaagcggatatggcggagcagagatactgtgttgaatatgccaaacgtggc
acggctggctgcaagaaatgcaaagacaagatcatgaaaggtctggtcaggatcggcaag
atcgttccaaacccattcagcgagtctgcaggggaaatgaaggaatggtatcatgtaaag
tgtatctttgagaagcttgagagagcgcgggccaccacaaagaagattgaggacatcact
gaactggagggatgggaggaacttcaggatgaggataaagatctcatcaataaacacgtt
tcagaactggcagctaaagttaattcaaccccaaagaagaaagtgcaagcaaagctaaac
accagtgggcagctgtcatcgccgccagctgatccaacagtcaatgctcctcgcaagttt
tctggcttcacagctaccaaggccggttcctcttcctccagtcctggaccatctccagcc
aaacccgctcagggtagcgttttatcagctcagatgtgtgaccccacacataaagacaac
ttacttcgtgagttcagaaaactctgtgctttagtggcagagaagtcgggctacaacgcc
aagacggagatcgtcagagacttcttaacaaaaggctcaggtggagacaaattcagagga
gatttgtacctgacagtgaagcttctcctcccaggcgtagtgaagaatgtgtacaacctc
aatgacaaacaaatcgtcaagctttttagccgcatactgaattgcaatcaggatgacatg
gtgcaagacttggaacagggagatgtttcggagacggtgcggatgtttttcgaggaaagc
aagtctttccctccttcagcaaaaagtcttctgaccatccaagaggtggatgcttcgctg
agccgattatcccagctcacaaaggaggacgatcagcaggcagagctgcagagcattgcc
aaaaaatgcaccgggaatgatctgaagtgctacattcgtttggtcaaacatgatttgaaa
atcaactcaggggcgaaacacattttggatgctgtagaccccaatgcctatgatgccttc
aaagcctcccgtaatctcggtgatgtgatagacagagtgctgcgtaaccagcaggatgct
tctaatggaactggcccccgaaagatcctcagcatcgaggcatctctgatgactccagta
cagccaatgctggcagaggcatgcaagtccattgagtacgccatgaagaagtgtcctaat
gggatgtattctgagatcaaatatgatggtgagcgcgtgcaggtccataagaacggcaat
cacttcagttacttcagtcgcagtctcaaaccagtcctcccacacaaggttgcccatttt
aaggacttcataccgcaggcgtttgctggtggtcatagcatgatccttgatgctgaagtt
cttcttattgacacaaagactagcaaaccactgccttttgggactcttggagtacacaag
aaagccgcttttcaggatgctcaagtgggcctgttcgtgttcgactgcatttattttaat
ggtgtcagtctaatggacaagcctctctgtgagagaagaaagtttctccatgataatatg
gtggaagttcctaaccgaattctgttctcagaaatgaagcatgtcacaagagctcctgat
ctggcagaaatgatcacgcgtgtcatcagagaggggctggagggcttggttctgaaggat
ataaagggcctttatgaaccaggaaaacgccactggctgaaggtgaagaaagactatctg
aatgaaggagcgatggcggacactgctgatcttgtggtgcttggagccttctatggcaaa
ggctcaaatggtggaattatgtccagtttcctcatgggctgctatgacccggaatccagg
aagtggtgcaccgttaccaagtgttcaggaggcttcgacgacgccatgttagacagactg
cagaaagatttggacgtgattaaaattggcaaggatccaagcaagatcccaggatggttg
aagattgtcaagaactattacccagatttcattatccgagatccacaaaaagcaccagtg
tgggaaatcacaggagcagagttttctaaatctgaaatgcacactgctgatggcatatcc
atccgattcccacgatgcacccgaatgcgtgatgacaaggactggaagacggcaactaac
cttcagcagctcaaggagctatatcgcatctcaaaggagaattgtgattttgaggtgacc
gctggtccatccaaagcgaaccaaaatgacaagagctcctcaggaggtgagagcggagga
agctctccatctgcatctcgcggagcatccacagctaacaaacccaaaaatggtcatacc
cccaaagcaaaggctgcgaaaacagaatcatctgctccggcagttaagaggaaactacca
gctgagaaacaagatgttaagaagataaaaacagaatcggttcacagcaatggtcaaagc
aaattgaagagcgttccaacaaccgacccgaagcaagaaaagacactacttgacattttc
accggagtaaagctctacctccctgaatcagtgaaagactttgagaagctccgacgctac
tttctagcatacgatggagatttggtgcccgagtatgactctgctttagccacacacacg
ctaggacagccagaggatggcagttcagcccagaaggtcacctccaactggatctgggaa
tgcatccggaaaaggagggtggttcccccctgctga

All links

Pathway (2)   
   KEGG PATHWAY (1)   
   KEGG MODULE (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (2)   
   ENSEMBL-DRE (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (19)   
   RefSeq(nuc) (1)   
   GenBank (9)   
   EMBL (9)   
Protein domain (5)   
   Pfam (5)   
All databases (38)   

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