KEGG   Danio rerio (zebrafish): 566017
Entry
566017            CDS       T01004                                 
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03018  RNA degradation
dre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    566017 (lsm8)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    566017 (lsm8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    566017 (lsm8)
   03041 Spliceosome [BR:dre03041]
    566017 (lsm8)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     566017 (lsm8)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     566017 (lsm8)
Spliceosome [BR:dre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    566017 (lsm8)
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 566017
NCBI-ProteinID: NP_001289395
ZFIN: ZDB-GENE-070629-3
Ensembl: ENSDARG00000091656
UniProt: E7EZ02
Position
4:9536860..9539422
AA seq 96 aa
MSTALESYIHRTVAIVTSDGRMIVGTLKGFDQAINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq 291 nt   +upstreamnt  +downstreamnt
atgtccaccgctctcgagagttacattcaccggactgttgctattgtcacttcggatggc
agaatgatcgtggggacgctaaaaggctttgatcaggcaatcaacctcatcctggatgaa
agccacgagcgggtcttcagctcttcacagggggtcgagcaggtggttctgggactgtat
attgtcagaggagataatgtggctgtgatcggtgagattgatgaagaaaccgattctgcg
ctggatcttggaaacataagagcagaaccactcaattctgtggtgcattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

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