KEGG   Danio rerio (zebrafish): 568176
Entry
568176            CDS       T01004                                 
Symbol
dcp1b
Name
(RefSeq) mRNA-decapping enzyme 1B
  KO
K12611  mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    568176 (dcp1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    568176 (dcp1b)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     568176 (dcp1b)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     568176 (dcp1b)
SSDB
Motif
Pfam: DCP1 mRNA_decap_C WH1
Other DBs
NCBI-GeneID: 568176
NCBI-ProteinID: NP_001038620
ZFIN: ZDB-GENE-040819-1
Ensembl: ENSDARG00000045484
UniProt: A3KNZ0
Position
4:complement(20302831..20314767)
AA seq 499 aa
MTASTGGSGSCLSMSLSALKRLDPYISSITDLASQVALYTLNNNTNEWEKTNVEGTLFVY
SRLASPRHGFTILNRLSMDNLTEPITKDLDFQLQHPFLLYRNARLSIYGIWFYDKEDCQR
IAELMKNLAGQEQQLQAQIATGCLSPRSAEQGVDIMQMLTKARNDYDKGKLSEPKEIGSG
GIIYGQTPHLIKPIPLKPAQDAHIQAHTQHDAEMDSKHLSVVTLFGAQPKPDLGSTQPSL
SVGRMGPARSSVARSLSYDDPSPAGGAVVSSTPMQHCPAIHKLMSGSLLQPLSESPESRL
CENGAVQIQPDPIQKLLMNPPPVAGTTGMPSIQLKQGEVGMGPQIHSMAKPSGPFPAQHL
FVPNKVPSAGVTSNVVSPHELLQKLTLVQQEQELHPHQEVLQPGLTTSSSNLSKTNLTQV
MSPQRIPATVAPTLLLSPSVFAQTKVTRADPEPVESRALSKSQLQTTLLHLIKNDASFLD
TIYEAYVSRLTTDSSSKPF
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgactgcaagcacaggtggcagtgggagctgtttatcaatgagtctgtctgctctgaag
agactcgacccctacatcagcagcatcacagacctagccagccaagtagcactctacacc
cttaacaacaacaccaatgaatgggaaaagacaaatgtggagggaactctgtttgtctat
agcaggcttgcctcccccaggcatggctttaccatcctcaatcgcttgagtatggacaac
ctgactgaaccaatcactaaggacttggattttcagctgcagcatccatttctcctgtac
aggaacgctcgcttgtccatctatggaatctggttctatgataaagaggactgtcagcgt
atagcagaactcatgaagaatttggcagggcaggaacagcagttacaggcgcaaattgct
actggctgtctctctccgagatcagcagagcagggtgtggatataatgcagatgctcact
aaagcacgaaacgactatgacaagggaaaactcagtgagccaaaggaaattggcagtggt
gggatcatctacggtcaaaccccccatctgatcaaacccattcccctcaaaccagcacag
gacgcacacattcaggcacacactcagcatgatgctgagatggactcaaaacatctgtca
gttgtcacactgtttggtgctcagccaaagccagacttgggctcaacacagcccagctta
tctgttggcaggatgggcccagcaaggtcttcagtggcccgctctctgtcttatgatgac
ccttctccagcaggtggtgctgtggtgtccagcacccccatgcagcactgtccagccatc
cacaagctcatgtctggttcactgctgcagcctctatctgaatccccagagagccgcctg
tgtgaaaacggagcagtccagatccagcctgacccaatacaaaaactgttaatgaaccct
cctcctgtggcagggactacagggatgccctccatccaattaaagcagggggaagttggc
atggggccccaaatccactccatggcgaagccctcggggccctttccagcgcagcatctg
tttgtcccaaataaagtgccctctgctggagtaacaagtaatgtggtttcacctcatgag
cttctacagaagctcacattagtgcagcaggagcaagagctgcatcctcaccaggaggtc
ctacagccaggtctgaccaccagcagctccaatctcagcaaaaccaatctgacacaggtg
atgtcaccacagcgtatcccagcgactgtagcccccaccctccttctttcccccagtgtg
tttgctcaaactaaagtaacaagagcagatccagaaccagttgaatcaagagcacttagc
aagtctcagctacagaccacattgctccatctcatcaagaatgatgcttcattccttgac
accatctatgaagcatatgtctcccgtctcacaacagactccagctcaaaacctttttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (47)   

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