KEGG   Danio rerio (zebrafish): 58118Help
Entry
58118             CDS       T01004                                 

Gene name
bdnf
Definition
(RefSeq) brain-derived neurotrophic factor isoform 1 precursor
  KO
K04355  brain-derived neurotrophic factor
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04010  MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 Environmental Information Processing
  Signal transduction
   04010 MAPK signaling pathway
    58118 (bdnf)
Cytokines [BR:dre04052]
 PDGF family
  Cysteine-knot growth factors
   Subclass II
    58118 (bdnf)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: NGF Spaetzle
Motif
Other DBs
NCBI-GeneID: 58118
NCBI-ProteinID: NP_001295577
ZFIN: ZDB-GENE-000412-1
Ensembl: ENSDARG00000018817
Vega: OTTDARG00000011618
Position
7
AA seq 278 aa AA seqDB search
MFQQVRRVMTILFVTMVISYFSCMRAAPMREIPGVQGGHRAEGYLGAAAAAAAAVTSGSR
GHGTPQSGGGLPSLTDTFEQVIEELLEVEGEATQQLGPGADQGQGGGGPIDAADSKDVDL
YASRVMISNQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISQWVT
AVDKKTAIDMSGQTVTVLEKVPVTNGQLKQYFYETKCNPLGYTKEGCRGIDKRHYNSQCR
TTQSYVRALTMDSKRKIGWRFIRIDTSCVCTLTIKRGR
NT seq 837 nt NT seq  +upstreamnt  +downstreamnt
atgttccaacaggttagaagagtgatgaccatcctgttcgttactatggttatttcatac
ttcagttgcatgagagctgcgcccatgagagagatcccgggcgtgcaggggggccaccgg
gccgagggctacctgggcgccgctgccgctgctgccgctgccgtcacatcgggcagccga
ggccacgggactccacagagtgggggcgggctgccctcgctcacggacactttcgagcag
gtcattgaggagttgcttgaggtggaaggggaagcgacgcagcaactggggcctggggcc
gaccagggccaaggagggggcggccctatagatgcggcagactcgaaggacgttgacctg
tatgcctcgcgggtgatgatcagcaaccaagtgcctttggagccgccgttactctttctc
ttggaggaatacaaaaactacctggatgccgccaacatgtcgatgcgtgtgcggcgacac
tcggaccccgcacggcggggggagctcagcgtttgtgacagtattagccagtgggtgaca
gctgtggacaaaaagacggcaatagacatgtcgggccagacggtcaccgttctggagaag
gtccccgtgactaatggtcagctgaagcaatacttttacgagaccaaatgcaaccccttg
gggtacacaaaggagggctgccgaggaatagacaagcggcactataactcgcaatgccgg
acaacccagtcttacgtgcgagcccttaccatggatagcaaaaggaagatcggctggcgg
tttatacggatagacacttcgtgtgtatgcacattgaccattaagaggggcagatag

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