KEGG   Desulforamulus reducens: Dred_1938
Entry
Dred_1938         CDS       T00494                                 
Name
(GenBank) beta-lactamase domain protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
drm  Desulforamulus reducens
Pathway
drm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:drm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dred_1938
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:drm03019]
    Dred_1938
Messenger RNA biogenesis [BR:drm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Dred_1938
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Lactamase_B_6
Other DBs
NCBI-ProteinID: ABO50457
UniProt: A4J5V4
Position
complement(2128626..2130290)
AA seq 554 aa
MAKEPKLAVIPLGGLGEIGKNMTAVRFGENIVLIDCGLMFPEEEMLGIDIVIPDITYLLE
HKEQVLGILLTHGHEDHIGALPYVLRQINVPVYGSKLALGLVQGKLKEHNLLDQVKLHTV
KPRDTIHIGPFRIEFIRVSHSIPDAMAIAIHTPVGTLLHTGDFKIDQTPVDGEVIDLPRF
AALGEKGVLVMMSDSTNVERPGYTMSERVVGNTFDETFRHAQERIIIATFASNVHRLQQA
ISVAHKYDRHVAVVGRSMVNVMQVASELGYIHIPEGTLIELDEAARLPKNKVVLITTGSQ
GEPMSALTRIAMNDHRQVDIMPGDTVIISATPIPGNEKLVARIIDQLFKLGAKVIYEAVS
GIHVSGHPSQEELKLMLNLVRPKFFIPVHGEYRMLKKHAELARELGIPGENIFVGENGQV
FEFSRRYGRMAGRVTSGKILVDGLGVGDVGNIVLRDRKQLSQDGILIVVVTMDKQNNKVL
AGPDIVSRGFVYVRESEILMEEAKNKVKLALDKCCTRGISEWAAIKSQVRDDLGKFLYER
TRRRPMILPIIMEV
NT seq 1665 nt   +upstreamnt  +downstreamnt
ttggctaaagaaccaaaattagctgtaattcctttggggggattaggcgagatcggtaaa
aatatgactgcggtgagatttggggaaaatattgtacttattgactgtggtttaatgttt
ccagaagaggaaatgctgggtatagatattgtaatcccggatattacttacctattggag
cataaggaacaggttttgggtattttgcttacacatggtcacgaggaccacataggtgcg
ctaccatatgttttacgacaaatcaatgttcctgtatatgggtctaagctggccctaggg
ctagtacaaggaaaattaaaggaacataatttgttggatcaggtgaaattgcatacggta
aaaccaagagataccattcatatagggcctttcaggattgaatttatcagagtgtctcat
agtataccggatgcaatggccattgctattcatacacctgtggggacattgttgcataca
ggagattttaaaattgaccaaacaccggtagatggcgaggtcattgatcttccaagattt
gcagctctgggagaaaagggtgtattagtaatgatgtcggatagtaccaatgttgagcgg
ccgggctataccatgtctgagagggtggttggtaatacctttgacgaaaccttcaggcat
gcccaggaaagaatcattattgcaacctttgcatccaacgtccaccgacttcagcaggca
atttcagttgcccataagtatgaccgtcatgtggcagtagtgggacgaagtatggtaaat
gtcatgcaagtagccagtgaattgggatacattcatataccggagggtactttaatcgaa
ttagatgaagccgctagactgcccaaaaataaggttgtccttattaccacaggcagtcaa
ggtgaacctatgtctgcattaacccgaattgctatgaatgaccatcggcaagttgatatt
atgccgggagatactgtcatcatctctgctaccccgatacccggcaatgagaaattagtt
gctcggattattgatcaactttttaagttgggtgctaaggtaatttatgaagctgtttcc
gggattcatgtttctggtcaccccagtcaagaagaattaaagttaatgcttaatttagtt
cgccctaaattctttatacctgttcatggagaatatagaatgctgaagaagcatgcggag
ttggcccgtgaacttggaatccctggagaaaatatttttgtgggcgaaaatggccaggtc
tttgagttttcccgtaggtatggcagaatggcaggaagagtgacttcgggaaaaattctt
gtggacgggctaggcgttggggatgttggaaatattgttttgcgagatagaaagcaatta
tcgcaggatggtattttaatcgtggttgtaaccatggataaacaaaacaataaggttcta
gcaggacctgacattgtttcgaggggatttgtctatgttcgcgaatcggaaattctgatg
gaagaagcaaaaaataaggttaaactagccttagataaatgttgtacccgtggaatttcg
gaatgggcagcaattaagtctcaagttagagatgacttaggcaagtttttatacgaaaga
actaggagaaggccaatgatcttaccgatcatcatggaagtataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (24)   

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