KEGG   Desulforamulus ruminis: Desru_1883
Entry
Desru_1883        CDS       T01518                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
dru  Desulforamulus ruminis
Pathway
dru03030  DNA replication
dru03430  Mismatch repair
dru03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Desru_1883
   03430 Mismatch repair
    Desru_1883
   03440 Homologous recombination
    Desru_1883
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dru03032]
    Desru_1883
   03400 DNA repair and recombination proteins [BR:dru03400]
    Desru_1883
Enzymes [BR:dru01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Desru_1883
DNA replication proteins [BR:dru03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Desru_1883
DNA repair and recombination proteins [BR:dru03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Desru_1883
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger HHH_6 tRNA_anti-codon Rv2179c-like DNA_pol3_a_NII HHH_3 DEDDh_C RNase_H_2 T2SSK Zn-ribbon_8 DUF655 DNA_pol3_a_NI
Other DBs
NCBI-ProteinID: AEG60144
UniProt: F6DU69
Position
1899329..1903606
AA seq 1425 aa
MTVSLVEVLDPSKINPDLTKIAKQMQVVGVVVNTQKKQWKLKIFLNKPLTREVENQFKAA
LEPLTPRPVVLEIDFHCPRIMPCQEPDIRFLQEQLAGQYPVVRGWLEQTEWFWEKDCLTV
TLPDEVSLDLLKSREGDLFLKNLIKRNFAVEAKIVFDLKPQSYSEEDWCSRQDQLEQALL
EKLASEQAVVPKEQKNGAASKEKAQDDTVILGRPIKGEAVPIKTIQEEERQAVVKGKIFS
LEIRQLKTGRQILTFHLTDFTDSIEVKKFLEETDADTAEQLKEGQWILVRGPVQYDKFTQ
ELTLMAYDINRASMPVRLDLAPEKRVELHLHTRMSSMDSVCSAAEAVKQAAAWGHPAVAV
TDHGVVQAFPEAYAAAKKAGIKLIFGLEGYLIDDGAALVFNLKKNVPLNNREYVVFDFET
TGFSPQKDDIIEIGAVKFLNGIETGRFGTMVKPGREIPYEITKLTGITPEMVKDAPEPAQ
ALAEFRSFIGDAILVAHNASFDLGFLRVGFAKYLDDEVRHPVIDTLGVARALCPELKNHK
LGTLVKEFKIELANHHRAVDDAAATGKLWQILMNKALQKNAEDLESLNDLGHKISHEKLR
SRHVTLLVKDEKGLKNLYQLVSLSHLEYFHRQPRIPKSKLVKLREGLLIGSACEAGELYQ
ALLSGVSPEELKEIASFYDYLEIQPLGNNEFMVRSGQVNSLEDLKKLNQRIVDLGNQLNI
PVVATGDVHFMNPEDGIYRSILMAGKGFEDADNQAPLYFKTTEEMLKDFSYLGRKTAEEV
VIWNPRSIAEAIQTFKPIPDQLHPPCIEGAEQQITDMTLARAEELYGNPLPLVVQQRVDK
ELKSIIGNGFAVLYLIAHKLVKRSLDDGYLVGSRGSVGSSLVATFTGITEVNPLPPHYRC
PDCRHSEFLQDGSAGSGADLPDKACPHCGTGYVKDGHDIPFEVFLGFEGDKVPDIDLNFS
GEYQPRAHKFTEELFGKDHVFRAGTIGTIAEKTAFGFVKNYLDERNIKKRNAEIKRLVTG
CAGVKRTTGQHPGGLMVVPSNADVHMFTPVQRPADDVKSDTITTHFDYHSIHDSLVKLDI
LGHDDPTVIRMLEDLTGINAREIPLDEPKTMSLFSSTEALGVTAEELRSSVGTYAIPEFG
TKFVRQMLVDTKPTTFSELVRISGFSHGTDVWLNNAQDLIRAGTCRLSEAISARDDIMVY
LIYKGLPPKQAFKIMEGVRKGKGVTAEDAEIMRSHQVPQWYIESCQKIKYMFPKAHATAY
VMMAFRIAWFKVHQPEAFYAAYFSVRADDFDAELMVQGPGKLRQVIEEIEEKGNAASQKE
KNLLTILEVVLEMNCRGYKLLPVSLEQSDSSKFLITPEGLLSPFAGLQGVGRTAAQSIVA
AREEAPFTSIDDLRNRARVSKTVIEVLQEHGCLRHLQASDQMALF
NT seq 4278 nt   +upstreamnt  +downstreamnt
ttgaccgtttctttagtagaagttttagatccatccaaaataaatcccgacttaaccaag
attgcaaagcaaatgcaggttgtcggggttgttgtcaatacacaaaagaagcaatggaaa
ttaaaaatctttttaaataaacctttgacccgtgaagtagaaaaccaattcaaagcggcc
ctggaaccccttacaccgaggccggttgttttagaaattgacttccactgcccaaggata
atgccttgccaagaaccggatataagatttcttcaggaacaattggcggggcaatatccg
gttgttcggggttggctggagcagacggaatggttttgggaaaaggactgcctgacggta
accctgccggatgaggttagtctggatttgctaaaaagcagagagggcgacctctttctt
aaaaacctgattaaaagaaattttgcggttgaagcaaaaattgtttttgatttaaaacct
caatcctactcggaggaggactggtgttctagacaggatcagttggagcaagccctgctg
gagaaactggcctctgaacaagcggtggttcccaaggaacaaaagaacggggctgccagt
aaggaaaaagctcaggacgataccgttatcctgggcagacccatcaaaggcgaagcggtg
cccattaaaaccatccaggaagaagagcgccaggcggtggtgaagggtaagatctttagc
ctggaaatcagacagttgaaaaccggccggcaaattttgacctttcatctgacggacttt
accgactccattgaagtaaaaaaatttctggaagaaacagatgcggataccgccgagcag
ttgaaggaagggcagtggatcctggtccggggaccggttcagtacgataagtttacccag
gaactaaccctgatggcttacgatatcaatcgagcaagcatgccggtgcgtttggacctg
gcgccggagaagagagtggagctgcacttacatacccggatgagttctatggacagtgtc
tgcagtgccgcggaagcggtgaagcaggcggcggcctggggacacccggccgtggccgtt
accgatcatggtgtggttcaggccttccccgaggcctatgccgctgccaaaaaggccggt
attaaactcatttttggcctggaaggatatctaattgatgacggcgctgcgctggttttt
aatcttaaaaagaatgtcccgttaaataaccgggaatacgttgtgtttgactttgagaca
accgggttttcgccgcaaaaggatgatattattgaaattggtgctgttaaatttctaaac
ggaatagagacaggccgctttggcaccatggtgaaacccggccgggaaattccctacgag
ataaccaagcttacggggattactccggaaatggtcaaagatgccccggaaccggcccag
gccctggccgaatttcgcagctttattggcgatgccatcctggtggcccataatgcttct
tttgatctggggtttctgcgggtaggatttgctaaatatctggatgatgaagtccgccat
ccggtcattgataccttgggggtagcccgggctttatgccccgaactgaagaatcataag
ctgggcaccttggtgaaagagtttaaaatcgagctggccaatcaccaccgggcggtggat
gatgcggctgccaccggcaaactgtggcaaattttaatgaataaagccctgcaaaagaat
gccgaagatctggaatccctgaatgatttaggccataaaatcagccacgaaaaactccgc
tcaaggcatgttactttgctggttaaagatgaaaagggattaaaaaatctttatcaactg
gtttccttatcccatcttgaatattttcaccggcagccgcgaattcccaaatcaaaactg
gtgaaactgcgggaggggctattgatcgggtctgcctgtgaagccggcgagttatatcag
gccttgctgtccggggtctcgccggaagaactgaaagagatcgcttccttttatgattat
ctggaaatacaacccctgggcaacaatgaatttatggtacgttccggtcaggtcaatagt
ctggaggacctgaaaaaattgaaccaaaggattgttgacctggggaatcagttaaacata
ccggtggtggccaccggggatgtgcacttcatgaatccggaggacggcatctaccgcagt
atcttgatggcgggcaagggatttgaagatgccgataaccaagcgcccctttattttaag
accaccgaagaaatgctgaaggacttttcttatcttgggcgaaaaacagcggaagaggtg
gttatctggaatccccgcagcattgcggaggccattcaaacctttaaacccattccggac
cagcttcatcccccttgtattgaaggggcggagcagcagattaccgatatgaccctggcc
cgggctgaggagttgtatgggaaccccctgcccttggtggtgcagcaaagggttgataaa
gagcttaaatccatcattggcaatggttttgccgtgttgtatctgattgctcataagctg
gtgaaaaggtctctggatgacggttatctggtaggatccaggggctccgtcgggtcctcc
ctggtggccacttttaccggcatcaccgaggtcaatcccttgccgcctcattaccgctgc
ccggattgccggcatagcgaatttcttcaggacggttccgccgggtcgggggccgacctg
ccggacaaagcctgcccccactgcggtactggctatgtgaaggacggacatgacattccc
tttgaagtattcctaggctttgagggagataaggtcccggatattgatttgaatttctcc
ggtgaataccagcccagagcccacaagtttacggaagaattattcggcaaggatcatgtg
ttccgggcgggaaccattggcaccattgcggaaaaaaccgcctttggttttgtgaaaaac
tatctggacgaaagaaatattaaaaagaggaatgccgaaattaaaagactggtaaccggt
tgtgccggcgtaaagagaaccaccggccagcatcccggcgggctgatggtggtgccctcc
aatgccgacgtgcatatgtttacgccggtgcagcggcctgcggatgatgtaaagtccgat
accattaccactcactttgattatcattccattcatgacagcctggtaaagctggatatt
ctgggccatgacgatccaacggtgattcgtatgctggaggatcttacggggatcaacgcc
cgggagattcccctggacgaacccaaaaccatgagcctgttttcttccacagaagccctg
ggagtgacggcggaggaactgcggtcttcggtgggcacctatgccattcccgagtttggc
accaagtttgtgcggcagatgctggtggataccaaacccaccactttttcggaactggtg
cgtatctccggtttttcccatggtaccgatgtgtggctgaacaatgcccaggacttaatt
agggcgggaacctgccgattgtccgaggccatttccgcccgggacgatattatggtttat
ttgatttataagggattacctcccaaacaggcttttaaaatcatggagggagtccgcaag
ggaaaaggagtaacggcagaggatgccgaaattatgcggagccaccaggttccccaatgg
tatattgagtcctgccaaaagattaaatatatgtttcccaaggcccacgccaccgcttat
gtgatgatggctttccgcatcgcctggttcaaggtgcaccagcctgaagccttttatgcc
gcttatttttccgtacgggcggatgattttgatgcggaattgatggttcagggaccggga
aaattacggcaagtcattgaagagattgaagaaaagggaaacgccgcctcccagaaagaa
aaaaacctcctgactattctggaagtggtgctggaaatgaactgccgcggctataaactg
ctgccggtaagcctggaacaatccgattccagcaaattccttattacccctgagggcctt
ctttcaccctttgcaggcttacagggggtgggaaggacggcggcgcaaagtattgtggcg
gccagggaagaagcgccctttacctccattgatgatctgcgcaaccgggccagggtttcc
aagacggtcattgaggtgcttcaggagcacggctgccttcgtcacctccaggcttccgat
caaatggcgctcttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (28)   

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