KEGG T00612: Dshi

Dinoroseobacter shibae: Dshi_1996

Entry

Dshi_1996 CDS T00612

Gene name

xylA

Definition

xylose isomerase (EC:5.3.1.5)

Orthology

K01805

xylose isomerase [EC:5.3.1.5]

Organism

dsh Dinoroseobacter shibae

Pathway

dsh00040	Pentose and glucuronate interconversions
dsh00051	Fructose and mannose metabolism
dsh01100	Metabolic pathways

Class

Metabolism; Carbohydrate metabolism; Pentose and glucuronate interconversions [PATH:dsh00040]
Metabolism; Carbohydrate metabolism; Fructose and mannose metabolism [PATH:dsh00051]

SSDB

Motif

Pfam:

AP_endonuc_2 Glyco_tranf_2_3

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

RoseoBase:

UniProt:

Position

complement(2114512..2115816)

AA seq 434 aa
MSDFFAGIPAVTYEGPEARSDFAFRHYNPDEMVMGKRMEDQLRFAVAWWHSFAWEGGDPF
GGPTFQRPWFGDTLDHARAKADAAFEMFRILNVPFYCFHDADIRPEGASFAETTANLEAM
VDYLGQKQEASGKRLLWGTANLFSHRRYMAGAATNPDPDVFAYAAATIKTCMDATHKLGG
ANYVLWGGREGYETLLNTDLGREREQAGRMLQMVVDYKHKIGFEGTILLEPKPQEPTKHQ
YDYDVATVFSFLSEFGLQDEVKMNIEQGHAILAGHSFEHELALAREFGILGSIDMNRNDY
QSGWDTDQFPNNIPEVALAYYEILRAGGFDTGGTNFDSKLRRQSLDPADLIAAHVAAMDV
CAAGLKAAARMLEDGELEQRREDRYAGWRAPSAEAMLNGGKLEDCFAHVMETGLDPQPVS
GGQERLEALVARYL

NT seq 1305 nt +upstreamnt +downstreamnt
atgagcgattttttcgcggggatccccgccgtcacctatgaaggccccgaggcccgcagc
gacttcgccttccggcactacaaccccgacgagatggtcatgggcaagcggatggaggat
cagctgcgcttcgccgtggcctggtggcattcctttgcttgggaagggggcgacccgttc
ggcggtccgaccttccagcgcccgtggttcggcgacaccctggatcatgcccgcgccaag
gccgatgcggcgttcgagatgttccgcatcctgaacgtgccgttctattgcttccacgac
gccgatatccgccccgagggcgcgagtttcgccgagaccaccgcgaaccttgaagcgatg
gtggactacctgggccagaagcaggaggcgagcggcaagcggctgctctggggcaccgcg
aacctgttctcgcaccggcgctacatggctggggcggcgacgaacccggacccggatgtg
ttcgcctatgccgccgccaccatcaagacctgcatggacgcgacccacaaactgggcggc
gcgaattatgtcctgtggggcgggcgcgaggggtacgagaccctgctcaacaccgatctg
gggcgcgagcgggagcaggcgggccggatgctgcagatggttgtggattacaagcacaag
atcgggttcgagggcacgatcctgctggagccgaaaccgcaggagcccacgaagcaccaa
tatgattacgacgtggccacggtgttcagctttctgtcggagttcggcctgcaggacgag
gtgaagatgaatatcgagcagggccatgcgatcctggccgggcattccttcgagcatgag
ctggcgctggcgcgggagttcgggatcctgggctccatcgacatgaaccgcaacgattac
cagtcgggctgggacaccgaccagttcccgaacaacatccccgaggtggcgctggcctat
tacgagatcctgcgcgcgggcggcttcgataccgggggcaccaatttcgattccaagctg
cggcggcaatcgctggacccggcggacctgatcgcggcccatgtggcggcgatggatgtc
tgtgccgcggggctgaaggcggcggcacggatgctggaggatggcgagttggagcagcgg
cgcgaggatcgctatgcgggctggcgcgcgccctcggcggaagcgatgctgaacggtggc
aagctggaggactgctttgcccatgtgatggagaccgggcttgatccgcagccggtctcg
ggcgggcaggaacggctggaggcgctggtcgcgcgatacctgtaa

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-DSH (1)   
   OC (1)   
   ROSEOBASE-DSH (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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