KEGG T00612: Dshi

Dinoroseobacter shibae: Dshi_2160

Entry

Dshi_2160 CDS T00612

Gene name

pdhC1

Definition

branched-chain alpha-keto acid dehydrogenase subunit E2 (EC:2.3.1.12)

Orthology

K00627

pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]

Organism

dsh Dinoroseobacter shibae

Pathway

dsh00010	Glycolysis / Gluconeogenesis
dsh00020	Citrate cycle (TCA cycle)
dsh00620	Pyruvate metabolism
dsh01100	Metabolic pathways
dsh01110	Biosynthesis of secondary metabolites
dsh01120	Microbial metabolism in diverse environments

Module

dsh_M00307

Pyruvate oxidation, pyruvate => acetyl-CoA

Class

Metabolism; Carbohydrate metabolism; Glycolysis / Gluconeogenesis [PATH:dsh00010]
Metabolism; Carbohydrate metabolism; Citrate cycle (TCA cycle) [PATH:dsh00020]
Metabolism; Carbohydrate metabolism; Pyruvate metabolism [PATH:dsh00620]

SSDB

Motif

Pfam:

2-oxoacid_dh Biotin_lipoyl E3_binding Biotin_lipoyl_2 HlyD HlyD_2 QRPTase_N

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

RoseoBase:

UniProt:

Position

2289232..2290494

AA seq 420 aa
MATEILMPALSPTMEEGTLAKWMVKEGDSVSSGDLLAEIETDKATMEFEAVDDGIIGKIL
VAAGTDDVKVNTLIAILLEEGEELGAEKPAEQPPEPASVQQEAAPQETAKAPPPKTGDRV
FASPLARRLAKQKGLDLSEIRGSGPHGRIVKADVDAAEQPAAVPEQAAAPQTRQPEGPKS
ASSVASIFADRPFTEVSLDGMRKTIAARLTEAKQTIPHFYLRRAANLDALLTFRTELNAQ
LAPSGKKLSVNDFVIKACARALQSVPHANAVWAEDRILQMQRSDVAVAVAIEGGLFTPVI
KDADQKSISALSEEMKDLAARARERKLAPSEYVGGTFAISNLGMFGIENFDAVINPPHGA
ILAVGAGVKKPTVDADGAVTVATQMSMTLSVDHRVIDGSVGAALLAEIVSGLENPLLLLA

NT seq 1263 nt +upstreamnt +downstreamnt
atggctaccgagattctgatgcctgcgctgtctccgaccatggaggaaggcacgctcgcg
aaatggatggtcaaggaaggcgacagcgtctcgtccggagacctgctcgccgaaatcgag
accgacaaggccacgatggagttcgaggctgttgatgatggcatcatcggcaagatcctc
gttgctgcgggcacggacgatgtgaaggtcaacacgctcatcgcgatcctgctcgaagag
ggcgaggagctcggcgcggagaagcctgcggagcaaccgccggagcccgcctccgtccaa
caagaggccgccccgcaagagactgccaaagcaccgccgccaaaaaccggagatcgtgtg
ttcgccagccccctcgcccggcgcctggcaaaacagaaaggtctggacctttccgagatc
cggggctcaggtccgcatggccgcatcgtgaaggcagatgtagatgccgcagaacagccg
gctgccgttccggaacaggctgccgcaccccaaacccgccagccagagggtccgaaatcg
gcttcgtccgtagcatcgatcttcgcggatcgtcccttcaccgaagtttcgctcgatggc
atgcgaaagaccatcgccgcgcgcctgacggaggccaaacagacgatcccgcatttctac
ctgcgcagagcggccaatcttgatgccctgctgactttccgaaccgagttgaatgcgcaa
ctcgcgcccagcggcaagaaactgagcgtcaatgatttcgtgataaaggcctgtgcccga
gcactgcagagcgtgccccacgccaatgctgtctgggcagaggaccgcatcctgcagatg
cagaggtccgatgtcgcggttgcagtggcgatcgagggcggcctgttcacgcccgtgatc
aaggatgcggatcaaaagtcgatttccgccctttcagaggaaatgaaagacctcgcagcc
cgcgcgcgcgagcgcaaacttgcgccgagtgaatatgtcggcggtaccttcgccatttcc
aatctcggcatgttcggaatcgagaatttcgacgcggtgatcaacccaccccacggggcc
attctcgccgtgggggcaggtgtcaaaaagccgaccgtcgacgcggatggggctgtaaca
gttgcgacgcagatgtccatgacgctgtcggtggaccaccgcgtcatcgacggctcggtt
ggcgccgcacttctggcagagatcgtatcaggcctcgaaaacccgcttcttcttctggca
tag

All links

Pathway (7)   
   KEGG PATHWAY (6)   
   KEGG MODULE (1)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-DSH (1)   
   OC (1)   
   ROSEOBASE-DSH (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (29)   

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