KEGG   Dichomitus squalens: DICSQDRAFT_50197
Entry
DICSQDRAFT_50197  CDS       T03133                                 
Name
(RefSeq) replication factor-a protein
  KO
K07466  replication factor A1
Organism
dsq  Dichomitus squalens
Pathway
dsq03030  DNA replication
dsq03420  Nucleotide excision repair
dsq03430  Mismatch repair
dsq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DICSQDRAFT_50197
   03420 Nucleotide excision repair
    DICSQDRAFT_50197
   03430 Mismatch repair
    DICSQDRAFT_50197
   03440 Homologous recombination
    DICSQDRAFT_50197
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dsq03000]
    DICSQDRAFT_50197
   03032 DNA replication proteins [BR:dsq03032]
    DICSQDRAFT_50197
   03400 DNA repair and recombination proteins [BR:dsq03400]
    DICSQDRAFT_50197
Transcription factors [BR:dsq03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    DICSQDRAFT_50197
DNA replication proteins [BR:dsq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    DICSQDRAFT_50197
DNA repair and recombination proteins [BR:dsq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     DICSQDRAFT_50197
   MMR (mismatch excision repair)
     DICSQDRAFT_50197
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     DICSQDRAFT_50197
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF223 POT1 HROB DUF5521
Other DBs
NCBI-GeneID: 18842235
NCBI-ProteinID: XP_007361388
JGI: 50197
Position
Unknown
AA seq 601 aa
MSDLPQLTAGICTRINDNVREDDQLFNIQPTVQLLSFKKIPPTSGPTQDRYRVIVSDGEH
FLQSMLATQMNYIVEEDQIAKGTIATIEKFSVNLVQGKRLLIILALKVLVKHAEKIGSPK
ALQPRGEDGAPASAPVTPGPSTSTTPAAAAVPARQQTQAGRGGRAAAVYPIESLSPYQTH
WTIKARVTNKSDIRTWSNQRGEGKLFSVTLMDESGEIRATAFNAAVDELYDRLQDGKVYL
ISKAKVNLAKKKFSNVNNEYELTFERSTEVEECHDATDVPTVKFNFINISSLQDVAKDST
CDVIGVVKDVSELSSITSKATSKIPKRELTIVDRSGYSVRMTLWGKQAEQYDENDHPVIA
FKGAKVGDFQGRSLSMMSSSTMHVNPDIPEAHALRGWYDAAGADQQFQSHTVTMVSGGGI
TFDRAEIRNLNDVKVSELGMFDKPDNFCARATIMHIKSDNISYPACPTTGCGKKVLQMGE
SWRCEKCDKSFPKPEHRYMVAMAVSDYSGQAWFQGFNDVGQTVFGMTADELVEIKDREEL
QYNTVINASIGKTFNFTCRAKQDTYNDQTRVRYGISRILPLNYREEAKYLADLLLTSDWA
R
NT seq 1806 nt   +upstreamnt  +downstreamnt
atgtctgaccttccacagctcactgccggcatctgcacccgcatcaacgacaacgtcaga
gaggatgaccaactcttcaacatacaacccaccgtgcagctcctttccttcaagaagatt
cctcccaccagcggtcccactcaagaccgctaccgcgtgatcgtgtccgatggggagcac
ttcctccagtcgatgctcgcgacgcagatgaactacattgtggaggaagatcaaattgcg
aaggggaccattgcgacgatcgaaaagttctcggtgaacctggttcaagggaagcgactt
ttgatcatcctcgctctcaaagtactggtcaagcatgcggagaaaataggctctccaaag
gcactgcagcctcgcggtgaagatggagctcccgcaagtgcacccgtaacccctggcccg
tccacttccaccacgcctgccgcagccgctgttcccgcgcgtcagcaaacacaggccggc
cgcggtggacgggctgctgctgtctatcccattgagagtcttagcccataccagactcac
tggacgatcaaggcacgtgtcacaaacaagtcggacatccgtacatggtcgaaccaaagg
ggcgagggcaagctgttcagcgtgactttgatggacgagagcggcgaaattagggccaca
gcgttcaatgctgcggtagacgaattgtatgaccgtctgcaagacggcaaggtctacctg
atttccaaggcgaaggtcaaccttgcaaagaagaagttctccaacgtcaacaatgagtac
gagctcacatttgagcgcagtactgaagtggaagagtgtcacgatgccaccgacgtccct
accgtcaagttcaacttcatcaacataagcagcttgcaagatgtggccaaggactccact
tgcgatgtgatcggggtcgtcaaggatgtgtcagaattgtcttccatcacttcgaaagcg
acaagcaagatcccgaaaagggaactcaccatcgttgaccgctccggatattccgtcagg
atgacgttgtggggcaagcaagcggagcagtacgacgagaacgaccaccccgtgatcgca
ttcaagggagccaaagtcggtgacttccaaggtcgctcgctctctatgatgagctcaagc
accatgcatgtcaatcccgacattcccgaggcgcatgctttgcgcggctggtatgacgcc
gccggtgctgaccaacaattccagtcgcacaccgttacgatggtctccggcggaggaatc
acttttgaccgcgcagagattcgcaacctcaatgacgtaaaggtgtcggagcttggtatg
ttcgataagccagataacttctgtgcacgagccacgatcatgcacatcaagagcgacaac
atttcatacccggcgtgccctacgactgggtgcggaaagaaggttctccagatgggtgag
agctggagatgtgagaagtgcgataagtccttcccgaagcccgagcacaggtacatggtc
gcgatggccgtctcggactactccggtcaagcgtggtttcagggtttcaatgatgtcggc
caaaccgttttcgggatgaccgctgatgaactcgtcgagatcaaggatcgcgaagaactt
cagtataacacggtcataaacgcctcgatcggcaagacgttcaacttcacatgcagagcg
aaacaggatacgtacaacgaccagacgcgggtgcgatacgggatctcgcggatcttgcct
ttgaattatcgtgaggaggccaaatatctcgcggaccttcttctcaccagcgactgggcg
cggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (24)   

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