KEGG   Desulfitobacterium hafniense Y51: DSY4858
Entry
DSY4858           CDS       T00333                                 
Name
(GenBank) hypothetical protein
  KO
K03702  excinuclease ABC subunit B
Organism
dsy  Desulfitobacterium hafniense Y51
Pathway
dsy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dsy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    DSY4858
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dsy03400]
    DSY4858
DNA repair and recombination proteins [BR:dsy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DSY4858
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      DSY4858
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 SWI2_SNF2 DUF87 AAA_16 UB2H Kinesin AAA_22 UvrD-helicase HEM4 Microtub_bd AAA_7 Thg1C Baculo_PEP_C
Other DBs
NCBI-ProteinID: BAE86647
UniProt: Q24MU5
Position
complement(5521848..5523908)
AA seq 686 aa
MEHPMEFRLRAPYKPSGDQPQAIDALVESIHSGRRHQTLLGVTGSGKTFTMANIIEKVQR
PTLILAHNKTLAAQLYTEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDE
IDKMRHSATAALFERRDVIVVASVSCIYGLGSPEEYRDLMVSLRQGQEIDRNDILKKLIS
IQYDRNDLAFERGTFRVRGDVVEVHPAGSSEHAVRIEMFGDEIEHIYEINVLTGEILGER
RHVSIFPNSHYVTARDKVLVAAENIEKELEEQLRRFKDEDKLLEAQRLEQRTRYDLEMLR
EMGFCNGVENYSRHLTFREAGETPYTLLHFFPEDYLMMIDESHVTLPQVRGMYEGDRSRK
TTLVDYGFRLPSALDNRPLKFAEFETLVPQRVYISATPGPYELEHCPQIVEQIIRPTGLL
DPEISVRPTKGQIDDLIGEINQRIARDERVLVTTLTKKMAEDLTDYLKNLNMSVKYLHSD
ITTLERVEILRELRLGDIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTI
GRAARNAQGKVIMYADQMTRSMEVAISETNRRRAIQEAYNEKHGITPQTIRKKIYEIPEA
TKVAEKKAAYGSKMPAEELAELLKSLEQEMRLAAKDMDFERAAEIRDAMIELKGEENKYK
RPTQGRARKREAAAPAGRKSGPRKRG
NT seq 2061 nt   +upstreamnt  +downstreamnt
ttggagcaccccatggagttccgtttacgcgctccctacaaaccctccggggatcagcct
caggccattgatgctctggtcgaaagtatccattccggcagacgtcatcaaaccctgctg
ggggtgacaggttcaggaaaaacctttaccatggccaacatcatcgaaaaagttcaacgg
cccactctgattctcgcccataataagaccttagcggctcagctttacactgagttcaag
gaattcttcccggaaaatgcagtggaatatttcgtcagttattatgattattatcagccg
gaagcttatgttccttccagcgatacctatatagaaaaggattcttcgatcaatgatgag
atcgataaaatgcgccactccgctacggcggccttattcgaacggcgtgatgtgattgtg
gtggccagtgtgtcctgcatctatggcttgggttcccctgaggaataccgggatttgatg
gtttccctgcggcaggggcaggaaattgaccgcaatgacattctcaaaaagctcatctcc
attcagtacgatcgcaatgatctggcttttgaacggggaactttccgtgtccggggagat
gtggtggaagtccatcccgccggctccagtgagcatgctgttcggatcgaaatgttcggg
gatgaaatcgaacatatttacgagatcaatgtccttaccggtgaaattttgggagaacgc
cggcatgtctccattttcccgaattctcactatgtcacggcacgggataaagtattggta
gctgctgagaatattgaaaaggaattggaagagcagctcagacggtttaaggatgaagac
aaacttttggaagctcagcgtttagagcagagaacccgctatgatctggagatgctgagg
gaaatgggattttgcaatggcgttgaaaactattcccgccatttaaccttccgggaggcc
ggagaaactccttatacccttttgcactttttcccggaagattacctgatgatgattgac
gaatcccatgtcacgctgcctcaggtccggggtatgtatgaaggggaccgttcccgtaaa
accactctggtagactacggattccggctgccctccgctttggacaaccgccccttgaaa
ttcgctgaatttgaaacgctggtccctcagcgggtttatatcagcgccacacccggtccc
tatgagctggaacattgcccccagattgtggagcaaattattcgccctaccgggcttttg
gatccggagatttcggtccggcccaccaagggccagatcgatgatctgatcggggaaatc
aaccaaagaattgcccgggatgagcgggtgctcgtcactaccctgaccaaaaagatggca
gaggatttaacggattacctgaaaaacctcaatatgtccgttaaatacctccactccgat
attacgaccctggagcgggtggagatcctgcgggaattgcgtttgggagatattgatgtc
atcgtgggcatcaatctgctccgggagggcttggaccttcctgaggtttccctggtggct
attctcgatgcggacaaggagggttttctccgtgccgagcgctctctgattcagaccatt
ggccgcgccgcccggaatgcccagggaaaagtcatcatgtatgcggatcaaatgacccgc
tccatggaagtggccatcagtgaaaccaaccgccgccgggccatccaggaagcctataat
gaaaagcatgggattacccctcagaccattcgcaagaaaatctacgaaatcccggaagcc
actaaggtggcggaaaagaaagcagcctatggatcaaaaatgccggccgaggaattggct
gagctgctcaaaagtctggaacaggagatgcgcttagccgctaaagatatggactttgaa
cgggcagcggagatccgggatgcgatgatcgagcttaaaggggaagagaataagtataag
cggcctacccagggccgtgcccgtaagagggaggcggcggctccggcagggcgtaagagt
gggcccaggaagaggggctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (74)   

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