KEGG   Desulfomonile tiedjei: Desti_5254
Entry
Desti_5254        CDS       T02147                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
dti  Desulfomonile tiedjei
Pathway
dti03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Desti_5254
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dti03021]
    Desti_5254
   03400 DNA repair and recombination proteins [BR:dti03400]
    Desti_5254
Enzymes [BR:dti01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Desti_5254
Transcription machinery [BR:dti03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Desti_5254
DNA repair and recombination proteins [BR:dti03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Desti_5254
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RnfC_N
Other DBs
NCBI-ProteinID: AFM27844
UniProt: I4CE53
Position
6058915..6063150
AA seq 1411 aa
MSPFSVHSQRLRKNFARIPQIAGIPNLIEIQKQSYDRFLQADVPPEAREDIGLQGVFRSV
FPIKDFSDTASLEFIKYTLGEEKYNVEECLQKGVTYAVPLKITVQLIVWDVDPDTNSRTI
RDVKEQEVYFGEIPIMTENGTFIINGTERVIVSQLHRSPGIFFDHDKGKTHASGKLLYSS
RIIPLRGSWIDFEFDPKDRLYVRIDRRRKLPVTVFLKALGYSSEEILNYFYNKQTILITP
DGLRRKVDLKLLVGTSAPSDIYVEGSEDVLVRKNKKITRAALKRLAQRPIAPLTMKVEDL
AGKVLAHDIIDEATGEVVAPCNKEIALDEAEQFVQDLTARGITSFDALFIEERIVSSSLR
DTLLEDKIDDRPNRVIEDYRKQRPDEETSNETLNAQIEIYRRLRPSNPATVEISNTFFNN
LFFRTEYYDLSRVGRLKLNRKLNISSDDAPLGLRTLRNDDIMLAVKYLLELKEGRPGREI
DDIDHMGNRRVRSVGELLENQYRIGLVRMERAIKERMSLQDVETLMPHDLINAKPVTAVV
KEFFGSSQLSQFMDQTNPLSGITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIE
TPEGPNIGLIVSLSTYARVNEFGFIETPYRPVTQRQVGKDIMFLTALDEEGHVIVQANAQ
LDNQNRLASDLVSVRHKEGEFALVAAEEPDLMDVSPNQLVSVAASLIPFLENDDANRALM
GSNMQRQAVPLLTTQAPLVGTGMEEVVATDSGVTVVAKRDGIVDSVDATRIVVKATDFNE
GDLDPGVDIYNLIKYQRSNQNTCINQKPIVKKGDRVAKGQVISDGPATDKGELALGRNVL
VAFMAWGGYNYEDSILVSEKIVKEDIFTSIHIEEFEVMARDTKLGKEEITRDIPNVGEEA
LRNLDDSGVIRIGAEVKPGDILVGKITPKGENQLSPEEKLLRAIFGEKAGDVRDSSLRVP
PGVEGTIIGARIFSRKGTDKDSRTISIENEEIAKLTKDRDDEMRIVEEGARERIRSMLLG
KVVSAPLVDGGSGRVFIKKGEPVTNEVMNVVPLELLRDVSLKGDTATEDEVVRILERLSD
QKHFWKMHYDERISRLKKGDELPPGVIKLVKVYIAIKRKLSVGDKMAGRHGNKGVLSRIL
PEEDMPYFEDGTPVEIVLNPLGVPSRMNVGQILETHLGWAARGLGESLNKMLEENFSPEK
LREQLFRIFECYEPERKRKVKAIIDEMDDDQVKRFVASLSSGVPIATPVFDGARETEIKS
LLTSADLSGTGQTKLYDGRTGDPFDTRVTVGIIYMMKLHHLVDDKIHARAIGPYSLVTQQ
PLGGKAQFGGQRLGEMEVWAMESYGAAYSLQEFLTVKSDDVTGRTRMYESIVKGTNVLEP
GLPESFNVLVKEIKSLGLDIELLESDTAVAG
NT seq 4236 nt   +upstreamnt  +downstreamnt
atgagtcctttttccgtgcattcacagaggctcaggaagaattttgcacgtataccgcag
attgccggcatacccaatttaatcgagattcagaagcagtcctacgatcggttcctgcaa
gctgatgtcccgcccgaggcgcgtgaagatatcggtcttcaaggagtgttccggtcggtg
tttcctattaaggatttttcggatacggcatctctggaattcatcaaatacaccctgggt
gaagaaaaatacaacgtagaagaatgccttcagaaaggcgttacctacgcggttccttta
aaaattacggttcaattgattgtatgggacgtagatccggacaccaattctcgaacgatc
agagacgtcaaagaacaggaagtctatttcggtgaaattccgatcatgaccgaaaacggt
acgttcatcattaacgggaccgaacgggtcatcgtatcgcagttgcatcggtctccaggc
atatttttcgatcatgacaaaggtaaaacacacgcaagcggtaagttgctttactcttcg
cggataattcctttgcgaggctcctggatcgatttcgaattcgatccgaaggacagactg
tatgtccgcatagatcgaaggcgcaagctgcctgttaccgtgtttctcaaggcactggga
tattccagtgaagagatattgaattatttctacaacaagcagacgattctcatcacgcct
gacggattgcggcgaaaagtcgacctgaagctgcttgtgggcacttcggctccttccgat
atttatgtggaaggatcggaagacgtcctggtacgcaaaaacaagaaaataacccgtgcg
gctctcaaaaggctcgcccagcgccctatcgctccgcttacgatgaaagtggaggatctt
gcgggcaaagtcctggcccacgacattatagacgaagccacaggtgaagtcgtagcgccg
tgcaacaaggaaatcgccctggatgaggctgaacaattcgttcaggatcttactgcacgg
ggcattacgagcttcgacgctctctttatagaagagcgtatcgtttcttcttctttgaga
gacacgttgctggaagacaagattgacgaccggccgaacagggttatcgaagactatcga
aagcaacgtccggacgaagaaacgagcaatgaaacacttaacgctcagatcgagatctac
cgcaggctgcggccctccaaccctgcaacggtcgagatcagcaacacctttttcaataac
ctgtttttcaggaccgagtattacgatctctcccgggtcggacgcctgaagctgaatcgc
aagctcaatatatccagcgacgacgctccgctcggtctgcggacgcttcgcaacgacgat
atcatgcttgcggtgaagtatctgcttgagttgaaggaaggaaggccgggaagagaaata
gacgatatcgaccatatgggaaatcgtcgggtccgttccgtgggcgagttgcttgagaac
cagtacagaatcgggctggttcgtatggaacgagccatcaaagaacgaatgagcctccag
gatgtggagactcttatgccgcacgatttgatcaatgcgaagccggttacggcagttgtc
aaggagttcttcgggtcctctcagttgtctcagtttatggatcagacaaatccattgagt
gggattacccataagcggcgtctgtctgcactcggaccgggcggactcacccgtgaaaga
gccggattcgaagtacgagacgttcacccgacccattatgggcgaatttgtcccattgaa
acgccggaaggtccaaatatcggccttatcgtgtcgctctcgacctatgcaagggtgaat
gaattcgggttcatagaaaccccatacagaccggtgactcagcgtcaggtcggcaaggat
atcatgttccttacggctctggatgaagaaggtcacgtcatcgtccaggcaaacgctcag
ttggataaccagaatcgccttgcctcggatctggtctcggttcgccataaagagggtgag
tttgcccttgtggctgcggaagaacccgatctcatggacgtttctccgaaccagttggtc
tccgtggcggcttctcttattccgttcctggagaacgacgacgcgaaccgtgcgctcatg
ggatcgaacatgcagcgccaggctgttcctcttcttaccactcaggctcccctggtgggc
acgggcatggaagaggtggtcgcgacagactccggagttaccgttgtggcaaaacgcgac
ggtatagtcgattccgttgatgctacccgtatcgttgtcaaagccacggatttcaatgaa
ggcgatctggaccctggtgtcgacatctacaatctgatcaagtaccagcggtctaaccag
aacacttgcatcaatcagaagcctatcgtgaaaaaaggcgatcgagtggcaaagggccag
gttatctcggacggtcctgcaacggataaaggcgaactggctctcggaagaaacgtgctc
gtggcattcatggcctggggcgggtacaactacgaagactcgattcttgtcagcgagaag
atcgtcaaggaagatatcttcacttctatccatatagaagaatttgaagtcatggcccgt
gacacgaaattgggcaaagaggaaataacacgagacattccgaatgtcggtgaagaggcg
cttcgtaacctcgacgattcgggtgtcattcgtataggagccgaggtaaaacccggtgat
atccttgtgggcaagatcactcccaagggagagaatcagcttagcccggaagaaaagctg
ctgcgagccatatttggtgaaaaagcaggtgatgtgagggattcgtcacttcgcgttcct
ccgggtgtcgaaggaaccatcatcggagcacgcatattttcccgaaaaggtactgacaag
gacagcagaacgatttccattgaaaatgaagaaatcgccaagctgaccaaagaccgcgac
gatgaaatgcgcattgtggaagaaggtgcgagagaacgaatccgcagcatgctgctgggc
aaagtcgtttcagcgccgctcgtggacggtggttcaggccgagtattcatcaaaaaggga
gaacccgtcaccaatgaagtgatgaacgtggttcctctggaattactccgggacgtttct
ctcaagggagatacggccacagaagacgaggttgttcgcattctcgagcgtctgagcgat
cagaagcatttctggaaaatgcactatgacgaacgaatcagccgcctcaagaaaggtgac
gaactgcctccgggcgtcattaagctcgtcaaagtctatatagcgatcaaacggaaactc
tccgttggcgataaaatggccggacgccacgggaacaaaggtgttctctctcgaattctt
cctgaagaggatatgccgtattttgaagacggcactcccgtagagatcgtgctgaacccg
ctcggtgttccgtcccgaatgaacgtcggccagatcctcgaaacccatcttggatgggcg
gctcgcgggcttggcgaatctttgaacaagatgctggaagagaatttctccccggagaaa
ctcagagaacagctatttcggatattcgaatgctatgaacccgaacgtaagcggaaagtg
aaagccatcatcgatgagatggatgacgatcaggtcaagagatttgtagcctctctttcc
agcggtgttcccattgcaacccccgtctttgacggtgcgcgggaaaccgagatcaaatcc
ctgcttacatcggccgatctatcaggtaccggacaaacgaagctttatgacggccggacc
ggagatccttttgacacaagggttactgtggggatcatctacatgatgaaactccaccac
cttgttgacgacaagatccatgcaagagctatagggccctactcactggttacgcagcaa
ccgttgggcggtaaagctcagttcggcggccagagactcggagaaatggaagtgtgggcc
atggaatcctatggagcagcctattctctccaggaattcctgaccgtgaaatccgacgat
gtcacaggccgtacgagaatgtacgaaagtattgtaaaaggaacgaatgtcctcgaaccg
ggtctgcccgaatcgttcaatgtcttggtcaaagagattaaatccttgggcttggatatc
gaactactggaaagtgatactgcagtggcgggttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (51)   

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