KEGG   Dyella thiooxydans: ATSB10_02920
Entry
ATSB10_02920      CDS       T04308                                 
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
dtx  Dyella thiooxydans
Pathway
dtx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dtx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ATSB10_02920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dtx03019]
    ATSB10_02920
   03016 Transfer RNA biogenesis [BR:dtx03016]
    ATSB10_02920
Enzymes [BR:dtx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     ATSB10_02920
Messenger RNA biogenesis [BR:dtx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ATSB10_02920
Transfer RNA biogenesis [BR:dtx03016]
 Prokaryotic type
  tRNA degradation factors
   ATSB10_02920
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 Rho_RNA_bind RNase_II_C_S1 HTH_12 OB_Dis3
Other DBs
NCBI-ProteinID: AND67746
UniProt: A0A160MX86
Position
321619..324318
AA seq 899 aa
MTQKKNTRGGKRRAAAPNRDDAPLRPSGKPRSNGGAPRKGAGAVRDPQAEREAQRYERPI
PSREAILSMLADRGEWLSEARIAETLQLDHPTDLMALRKRLGAMVRDGQLLQGRRGDYAP
AQKLDLIPGLVIANAEGYGFLRPDEGGDDLYLSPQQMRAVMHGDRVLASVVGLDRRGRRQ
GAIVEVLQRRSPRLVGRVTVENGVTVVAPDDRRLHQDILIPPGKEQGARNGQIVVVEITD
PPTAHRAPLGEIRSVLGERLQPSLLVEMAIASYDLPREWSPEVLRDAAQVEPEVTAAERE
GRVDLRKLPLVTIDGADARDFDDAVYAEPKRGGGWRLIVAIADVSHYVKPGTALDTEAQE
RSTSTYFPGFVVPMLPETLSNGICSLNPKVERLCMVCDMQINAEGEVTKSKFYDAVMLSH
ARLTYDKVWQVVGLEDADTIAEVADVLPQIRHLHALYKAMAAQRLRRGAIDFETPEVKFR
LDQRGEVEAMGAIERNDAHKLIEECMIAANVQAALFLEKKKIPALFRAHEPPPAEKYEDL
QQFLREFKLSLPPLAEVTPGDFAELLRLVHERPERELIQSVLLRAQSMAAYQPENRGHFG
LALSAYAHFTSPIRRYPDLLVHRAIRFALAGGKLANYVYTPAEMGSLAVHCSQRERRAEE
AERDVDERFKCAWMSKHVGSEFDGVVTGVTSFGLFVELDESKVSGLVHISQLANDYYHFD
PVRKLLKGEKSGEQFRLGDHVRVQVLRASLEDRKIDFRLVPQKKRGAPPPKTARAYDYAA
SGERYSLPKTAAAPAPVAKSQGMFGRAANAIGRAFGRRDAEVPAKAPVSDNPPPRAHARP
ASALPALPPVAAPAGKPKGKATKKAATKASRARPEPKPKAEPKQKPKGRGGRPTRSKGK
NT seq 2700 nt   +upstreamnt  +downstreamnt
gtgacccagaagaaaaacacgcgtggcggcaagcgccgcgcagcagcacccaaccgcgac
gacgcccccctgcggccgtccggcaagccccgctccaacggcggagcgccgcgcaagggc
gccggcgcggtccgcgatccgcaggccgagcgcgaggcgcagcgctacgaacgaccgatc
cccagccgcgaggcgatcctctcgatgctggccgaccgcggcgaatggctcagcgaagcc
cgcatcgccgaaaccctgcagctcgaccatcccaccgacctgatggccctgcgcaagcgc
ctcggcgcgatggtgcgcgatggccagctgctgcaggggcgtcgcggcgactacgcccct
gcacagaagctggacctgattcccggactggtgatcgccaacgccgagggctacggcttc
ctgcgtccggacgagggtggcgacgacctctacctttcgccgcagcagatgcgtgcggtg
atgcacggcgatcgcgtcctcgccagcgtggtgggcctcgaccggcgtggccgccgccag
ggcgccatcgtcgaagtgctgcagcgacgctcgccgcggctggtcggccgcgtgacggtc
gagaacggcgtcaccgtggtggcgcccgacgatcgccgcctgcaccaggacatcctgatt
ccgccgggcaaggagcagggcgcccgcaacgggcagatcgtcgtcgtcgagatcaccgac
ccgccgaccgcgcatcgtgcgccgctgggagagatccgctcggtgctgggcgaacgcctg
cagccttcgctgctggtggagatggcgatcgccagctacgacctgccgcgtgaatggtcg
ccggaggtgctgcgcgacgccgcccaggtcgagccggaagtcaccgccgccgagcgcgag
ggccgcgtcgacctgcgcaagctgccgctggtgaccatcgacggcgccgacgcgcgcgac
ttcgatgatgccgtgtatgccgagccgaaacgtggtggcggctggcggctgatcgtggcg
atcgccgacgtgtcgcactacgtcaagccgggcaccgcgctggataccgaggcgcaggag
cgcagcacctcgacctacttccccggcttcgtggtgccgatgctgccggagacgctgtcc
aacggcatctgttcgctcaacccgaaggtggagcggctgtgcatggtgtgcgacatgcag
atcaatgccgagggcgaggtgaccaagtcgaagttctacgacgcggtgatgctgtcgcat
gcgcgcctgacctacgacaaggtgtggcaggtggtcgggctggaagatgccgacacgatc
gccgaggtggccgacgtgctgccgcagatccgccacctgcacgcgctgtacaaggcgatg
gcggcccagcgcctgcgccgcggtgcgatcgatttcgagacgccggaggtgaagttccgc
ctcgaccagcgtggcgaggtcgaggcgatgggcgcgatcgagcgcaacgacgcgcacaag
ctgatcgaggagtgcatgatcgccgccaacgtgcaggcggcgctgttcctggaaaagaag
aagatccccgcgctgttccgcgcccacgagccgccgccggcagagaagtacgaggacctg
cagcagttcctgcgtgagttcaagctcagcctgccgccgctggccgaggtcaccccgggt
gatttcgccgagctgttgcggctggtacacgagcgccccgagcgcgagctgatccagtcg
gtgctgttgcgggcgcagagcatggccgcctaccagccggagaatcgtggccacttcggc
ctggcgctgagtgcgtacgcgcacttcacttcgccgatccgtcgctaccccgacctgctg
gtccatcgcgcgatccgcttcgcactcgctggcggcaagctggccaattacgtctacacc
ccggccgaaatgggttcgctggcggtgcactgctcgcagcgcgagcggcgtgcggaggag
gccgagcgcgacgtcgacgagcgcttcaagtgcgcctggatgagcaagcacgtcggcagc
gagttcgacggcgtggtcaccggcgtcacctcgttcggcctgttcgtggagctggacgag
tcgaaggtgtccggcctggtgcacatcagccagctggccaacgactattaccacttcgac
ccggtgcgcaagctgctcaagggcgaaaagtccggcgagcagttccgcctcggcgaccat
gtgcgcgtgcaggtgctgcgcgccagcctggaggatcgcaagatcgacttccggctggtg
ccgcagaagaagcgcggcgcgccgcctccgaagaccgccagggcctatgactacgcggcc
agtggcgaacgctactcgttgcccaagaccgcggccgcaccggcgccggtcgcgaagagc
cagggcatgttcggtcgtgcggccaatgcgatcggccgcgctttcggccgtcgtgacgcc
gaggtgccggcaaaggcgccggtgagcgataatccgccgccccgcgcccatgcgcggccg
gcttcggccttgcctgcgctgccgccagtcgcagcgcccgccggcaagccgaagggcaag
gcaacgaaaaaggcggctaccaaggcgtcccgtgctcggcccgagcccaagcccaaggcc
gagccgaagcagaagccgaaaggccggggcgggcgtcccactcgatcgaaaggcaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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